Ss1.1-Pig4-TMW8036F19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCTAGAGATAAAGGAAACTTTTATGAGGCTTCAGATTGGTTTAAGGAAGCTCTTCAGA TTAATCAGGACCATCCAGATGCTTGGTCTTTAATTGGTAATCTTCATTTGGCAAAACAAG AATGGGGCCCAGGCCAGAAAAAATTCGAGAGGATATTAAAACAACCATCTACTCAGAGTG ACACTTACTCTATGCTGGCCCTTGGCAATGTCTGGCTCCAAACTTTGCATCAGCCCACCC GAGATAGAGAAAAGGAAAAGCGTCATCAAGATCGTGCTCTGGCCATCTACAAGCAAGTAC TCAGAAATGATGCAAAGAATCTATATGCTGCTAATGGCATAGGAGCCGTTTTAGCCCATA AAGGCTATTTCCGAGAAGCTCGTGATGTATTTGCCCAAGTAAGAGAAGCAACAGCAGATA TCAGTGATGTGTGGTTGAATCTAGCACACATCTACGTGGAACAGAAGCAATATATCAGTG CCGTTCAGATGTATGAAAACTGCCTCCGAAAGTTCTATAAGCACCAGAACACGGAAGTTG TACTCTATTTGGCCCGGGCCCTCTTCAAGTGTGGCAAGTTACAGGAATGCAAACAGACTT TGCTGAAGGCTAGACATGTGGCACCCAGTGATACAGTTCTTATGTTTAATGTGGCCTTGG TCCTGCAAAGATTAGCTACCTCTGTCCTGAAAGATGAAAAGAGTAATCTGAAGGAAGTAC TTAATGCTGTGAAAGAACTGGAGCTGGCACACAGATACTTCAGCTACTTGAGTAAAGTGG GAGATAAAATGAGATTCGATTTGGCCCTCGCTGCTACAGAAGCCAGGCAATGCTCTGACT TGCTGAGCCAGGCCCAGTACCACGTGGCCCGGGCACGCAAACAAGATGAAGAGGAAAGGG AGTTGCGGGCCAAACAAGAGCAAGAGAAAGAACTGTTAAGGCAAAAGCTTCTCAAAGAAC AGGAAGAGAAACGTCTCAGAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCTAGAGATAAAGGAAACTTTTATGAGGCTTCAGATTGGTTTAAGGAAGCTCTTCAGA TTAATCAGGACCATCCAGATGCTTGGTCTTTAATTGGTAATCTTCATTTGGCAAAACAAG AATGGGGCCCAGGCCAGAAAAAATTCGAGAGGATATTAAAACAACCATCTACTCAGAGTG ACACTTACTCTATGCTGGCCCTTGGCAATGTCTGGCTCCAAACTTTGCATCAGCCCACCC GAGATAGAGAAAAGGAAAAGCGTCATCAAGATCGTGCTCTGGCCATCTACAAGCAAGTAC TCAGAAATGATGCAAAGAATCTATATGCTGCTAATGGCATAGGAGCCGTTTTAGCCCATA AAGGCTATTTCCGAGAAGCTCGTGATGTATTTGCCCAAGTAAGAGAAGCAACAGCAGATA TCAGTGATGTGTGGTTGAATCTAGCACACATCTACGTGGAACAGAAGCAATATATCAGTG CCGTTCAGATGTATGAAAACTGCCTCCGAAAGTTCTATAAGCACCAGAACACGGAAGTTG TACTCTATTTGGCCCGGGCCCTCTTCAAGTGTGGCAAGTTACAGGAATGCAAACAGACTT TGCTGAAGGCTAGACATGTGGCACCCAGTGATACAGTTCTTATGTTTAATGTGGCCTTGG TCCTGCAAAGATTAGCTACCTCTGTCCTGAAAGATGAAAAGAGTAATCTGAAGGAAGTAC TTAATGCTGTGAAAGAACTGGAGCTGGCACACAGATACTTCAGCTACTTGAGTAAAGTGG GAGATAAAATGAGATTCGATTTGGCCCTCGCTGCTACAGAAGCCAGGCAATGCTCTGACT TGCTGAGCCAGGCCCAGTACCACGTGGCCCGGGCACGCAAACAAGATGAAGAGGAAAGGG AGTTGCGGGCCAAACAAGAGCAAGAGAAAGAACTGTTAAGGCAAAAGCTTCTCAAAGAAC AGGAAGAGAAACGTCTCAGAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 67-258, gnl|bosTau2|chr15 (26742485-26742676) | |
| 67-258, gnl|Hg17|chr11 (10745927-10746118) | |
| 67-258, gnl|Mm7|chr7 (106961778-106961969) | |
| 340-491, gnl|bosTau2|chr15 (26742976-26743127) | |
| 340-491, gnl|canFam2|chr21 (37128007-37128287) | |
| 340-491, gnl|danRer3|chrNA (60932723-60932385) | |
| 340-491, gnl|dasNov1|scaffold_1513 (182138-181839) | |
| 340-491, gnl|echTel1|scaffold_306728 (9687-10024) | |
| 340-491, gnl|fr1|chrUn (37044574-37044378) | |
| 340-491, gnl|galGal2|chr5 (6307755-6307390) | |
| 340-491, gnl|hg17|chr11 (10746294-10746589) | |
| 340-491, gnl|Hg17|chr11 (10746463-10746614) | |
| 340-491, gnl|mm7|chr7 (106962139-106962412) | |
| 340-491, gnl|Mm7|chr7 (106962286-106962437) | |
| 340-491, gnl|monDom2|scaffold_10 (61050382-61050727) | |
| 340-491, gnl|oryCun1|scaffold_162830 (6805-7101) | |
| 340-491, gnl|panTro1|chr9 (10982152-10982447) | |
| 340-491, gnl|rheMac2|chr14 (61176330-61176035) | |
| 340-491, gnl|rn3|chr1 (168915538-168915808) | |
| 340-491, gnl|tetNig1|chr5 (6290398-6290204) | |
| 340-491, gnl|xenTro1|scaffold_621 (115012-115396) | |
| 607-757, gnl|bosTau2|chr15 (26744905-26745055) | |
| 607-757, gnl|canFam2|chr21 (37130318-37130475) | |
| 607-757, gnl|danRer3|chrNA (60927169-60927012) | |
| 607-757, gnl|dasNov1|scaffold_1513 (180746-180589) | |
| 607-757, gnl|echTel1|scaffold_306728 (10987-11144) | |
| 607-757, gnl|fr1|chrUn (37044067-37043916) | |
| 607-757, gnl|galGal2|chr5 (6304889-6304732) | |
| 607-757, gnl|hg17|chr11 (10748607-10748764) | |
| 607-757, gnl|Hg17|chr11 (10748608-10748759) | |
| 607-757, gnl|loxAfr1|scaffold_33529 (4557-4714) | |
| 607-757, gnl|mm7|chr7 (106965033-106965190) | |
| 607-757, gnl|Mm7|chr7 (106965034-106965184) | |
| 607-757, gnl|monDom2|scaffold_10 (61054242-61054404) | |
| 607-757, gnl|oryCun1|scaffold_162830 (8918-9075) | |
| 607-757, gnl|panTro1|chr9 (10984464-10984621) | |
| 607-757, gnl|rheMac2|chr14 (61174035-61173878) | |
| 607-757, gnl|rn3|chr1 (168918149-168918306) | |
| 607-757, gnl|tetNig1|chr5 (6289900-6289748) | |
| 607-757, gnl|xenTro1|scaffold_621 (117085-117242) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-258, gnl|bosTau2|chr15 (26742485-26742676) | |
| 67-258, gnl|Hg17|chr11 (10745927-10746118) | |
| 67-258, gnl|Mm7|chr7 (106961778-106961969) | |
| 340-491, gnl|bosTau2|chr15 (26742976-26743127) | |
| 340-491, gnl|canFam2|chr21 (37128007-37128287) | |
| 340-491, gnl|danRer3|chrNA (60932723-60932385) | |
| 340-491, gnl|dasNov1|scaffold_1513 (182138-181839) | |
| 340-491, gnl|echTel1|scaffold_306728 (9687-10024) | |
| 340-491, gnl|fr1|chrUn (37044574-37044378) | |
| 340-491, gnl|galGal2|chr5 (6307755-6307390) | |
| 340-491, gnl|hg17|chr11 (10746294-10746589) | |
| 340-491, gnl|Hg17|chr11 (10746463-10746614) | |
| 340-491, gnl|mm7|chr7 (106962139-106962412) | |
| 340-491, gnl|Mm7|chr7 (106962286-106962437) | |
| 340-491, gnl|monDom2|scaffold_10 (61050382-61050727) | |
| 340-491, gnl|oryCun1|scaffold_162830 (6805-7101) | |
| 340-491, gnl|panTro1|chr9 (10982152-10982447) | |
| 340-491, gnl|rheMac2|chr14 (61176330-61176035) | |
| 340-491, gnl|rn3|chr1 (168915538-168915808) | |
| 340-491, gnl|tetNig1|chr5 (6290398-6290204) | |
| 340-491, gnl|xenTro1|scaffold_621 (115012-115396) | |
| 607-757, gnl|bosTau2|chr15 (26744905-26745055) | |
| 607-757, gnl|canFam2|chr21 (37130318-37130475) | |
| 607-757, gnl|danRer3|chrNA (60927169-60927012) | |
| 607-757, gnl|dasNov1|scaffold_1513 (180746-180589) | |
| 607-757, gnl|echTel1|scaffold_306728 (10987-11144) | |
| 607-757, gnl|fr1|chrUn (37044067-37043916) | |
| 607-757, gnl|galGal2|chr5 (6304889-6304732) | |
| 607-757, gnl|hg17|chr11 (10748607-10748764) | |
| 607-757, gnl|Hg17|chr11 (10748608-10748759) | |
| 607-757, gnl|loxAfr1|scaffold_33529 (4557-4714) | |
| 607-757, gnl|mm7|chr7 (106965033-106965190) | |
| 607-757, gnl|Mm7|chr7 (106965034-106965184) | |
| 607-757, gnl|monDom2|scaffold_10 (61054242-61054404) | |
| 607-757, gnl|oryCun1|scaffold_162830 (8918-9075) | |
| 607-757, gnl|panTro1|chr9 (10984464-10984621) | |
| 607-757, gnl|rheMac2|chr14 (61174035-61173878) | |
| 607-757, gnl|rn3|chr1 (168918149-168918306) | |
| 607-757, gnl|tetNig1|chr5 (6289900-6289748) | |
| 607-757, gnl|xenTro1|scaffold_621 (117085-117242) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ova (0.129132) |