Ss1.1-Pig4-TMW8036G10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCAAGGCAGCCCATCCATCCGTGGACAGTATTAGTCAGTCCTTCCTCTGGTGCAGCC CGATATGCTTTTTGGTGACTTTTAGCTTTGAGGCCGGTCATTCCCTCAGGAACAGTACTG AGCCAGTCAACTTCCTCAAGAGTCCAAGACCACATAAAGATGTAGGACAGGTGCCCCTAG GTTCTGTGCAGTCTGGGCCCTGCAGCAAATCCCTGGACATGGTCCTTTTTAAGGCTCTGA CTCCTGCTCCCTGAGCAGCACAGGGAGTTGACATCACCCCAGATCCTTGTTATCAGCAGC TAGCACGTGGAGCTGAGTGATAGAGCTCCCTGGGTCCCAGTGTCTTCCCCGTTGGTCATG AACACTGCTACACGACACTCACCTGGCTGGGAGCAGGTGTGTTGGAGTGAGGCCAGTCGA GGTGGTGACAATGATTCAAAGACAACCCATAGTCCCCTCAGAAGAAAAGAGATTGGTTAA TATGGCCTGAATTGGGGGCTAGGGGAACTACTTCTGGTTAAACTGTGGCAGACATCGGGG TCGAAAAAAGGGAAAGGGTTCTTGAGGAAGCCTTTTTTTCCCTGATAGGGTGGAGTTTGT AGTTTTGGATAGGTCCCTTGTACCTCTCACTTTCAGTGCTGGTGGGGGTGTATGGGCTCG GGGTATTTTCTGCCCTTTTGTGCTAGGGACCATGGTTGACCAAAGTGGCCCCGATCAGGT AGGAGGCAATCCTTCGCTTCTGATAGTCCTAAGCTCTGGACAGCTTCGTCTTGCTGCAGC TTGATGAACTGGGACCAGCATGTGACTGCTTTATCAACTCACTGCTGTCCAGTGACAGAC TGAATGAAGGCTGTCTTAGACTTGGGCCTCATCTTTTCCTCTGCTGGCACCCTAAGGGCA TTGTGTGAACAAGTATGCTAGGTGACCACAGCCCACCGGAAATGGATCACAATTCCTCTT GTCTCTTCATTTCTACCTTTGTCATAACCTCATGCCTCAAATTTGTTGGGTGGGAGAAAA ATCTCGAAGAGAATGGATGTGTGTATATGTATAAACAAATCACTTTGTTGTACAGCAGAA ATGATCACAACATTGTAAAACAACTATACTTCAATAACTTTAAAAAATGAAAAAAAAATC TGTTGCCAGCTCTTTTGGCAATGGAGGGATCAAGAAGGGAGATGTTTATCCATTATAACT TTCAAAACCCCATGTAAAGGAAAGGGTCATTTAGGATGACATTCCTTGAAATAAATTTCA GGAGAATCTAGGCCAAAGAGGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCAAGGCAGCCCATCCATCCGTGGACAGTATTAGTCAGTCCTTCCTCTGGTGCAGCC CGATATGCTTTTTGGTGACTTTTAGCTTTGAGGCCGGTCATTCCCTCAGGAACAGTACTG AGCCAGTCAACTTCCTCAAGAGTCCAAGACCACATAAAGATGTAGGACAGGTGCCCCTAG GTTCTGTGCAGTCTGGGCCCTGCAGCAAATCCCTGGACATGGTCCTTTTTAAGGCTCTGA CTCCTGCTCCCTGAGCAGCACAGGGAGTTGACATCACCCCAGATCCTTGTTATCAGCAGC TAGCACGTGGAGCTGAGTGATAGAGCTCCCTGGGTCCCAGTGTCTTCCCCGTTGGTCATG AACACTGCTACACGACACTCACCTGGCTGGGAGCAGGTGTGTTGGAGTGAGGCCAGTCGA GGTGGTGACAATGATTCAAAGACAACCCATAGTCCCCTCAGAAGAAAAGAGATTGGTTAA TATGGCCTGAATTGGGGGCTAGGGGAACTACTTCTGGTTAAACTGTGGCAGACATCGGGG TCGAAAAAAGGGAAAGGGTTCTTGAGGAAGCCTTTTTTTCCCTGATAGGGTGGAGTTTGT AGTTTTGGATAGGTCCCTTGTACCTCTCACTTTCAGTGCTGGTGGGGGTGTATGGGCTCG GGGTATTTTCTGCCCTTTTGTGCTAGGGACCATGGTTGACCAAAGTGGCCCCGATCAGGT AGGAGGCAATCCTTCGCTTCTGATAGTCCTAAGCTCTGGACAGCTTCGTCTTGCTGCAGC TTGATGAACTGGGACCAGCATGTGACTGCTTTATCAACTCACTGCTGTCCAGTGACAGAC TGAATGAAGGCTGTCTTAGACTTGGGCCTCATCTTTTCCTCTGCTGGCACCCTAAGGGCA TTGTGTGAACAAGTATGCTAGGTGACCACAGCCCACCGGAAATGGATCACAATTCCTCTT GTCTCTTCATTTCTACCTTTGTCATAACCTCATGCCTCAAATTTGTTGGGTGGGAGAAAA ATCTCGAAGAGAATGGATGTGTGTATATGTATAAACAAATCACTTTGTTGTACAGCAGAA ATGATCACAACATTGTAAAACAACTATACTTCAATAACTTTAAAAAATGAAAAAAAAATC TGTTGCCAGCTCTTTTGGCAATGGAGGGATCAAGAAGGGAGATGTTTATCCATTATAACT TTCAAAACCCCATGTAAAGGAAAGGGTCATTTAGGATGACATTCCTTGAAATAAATTTCA GGAGAATCTAGGCCAAAGAGGTGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 701-811, - strand, RNAz p=0.520025 | |
| 773-889, - strand, RNAz p=0.571799 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 701-811, - strand, RNAz p=0.520025 | |
| 773-889, - strand, RNAz p=0.571799 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-1008, gnl|bosTau2|chr10 (11901183-11902190) | |
| 2-1008, gnl|canFam2|chr8 (7417150-7418892) | |
| 2-1008, gnl|dasNov1|scaffold_68109 (2763-4660) | |
| 2-1008, gnl|echTel1|scaffold_316052 (45961-44134) | |
| 2-1008, gnl|hg17|chr14 (23977303-23979129) | |
| 2-1008, gnl|Hg17|chr14 (23977671-23978653) | |
| 2-1008, gnl|loxAfr1|scaffold_9350 (67265-69146) | |
| 2-1008, gnl|mm7|chr14 (50763438-50764956) | |
| 2-1008, gnl|oryCun1|scaffold_179870 (6348-8147) | |
| 2-1008, gnl|panTro1|chr15 (22882396-22884222) | |
| 2-1008, gnl|rheMac2|chr7 (87336321-87338163) | |
| 2-1008, gnl|rn3|chr15 (34057041-34058556) | |
| 1136-1284, gnl|bosTau2|chr10 (11902181-11902327) | |
| 1136-1284, gnl|canFam2|chr8 (7417150-7418892) | |
| 1136-1284, gnl|dasNov1|scaffold_68109 (2763-4660) | |
| 1136-1284, gnl|echTel1|scaffold_316052 (45961-44134) | |
| 1136-1284, gnl|hg17|chr14 (23977303-23979129) | |
| 1136-1284, gnl|Hg17|chr14 (23978644-23978804) | |
| 1136-1284, gnl|loxAfr1|scaffold_9350 (67265-69146) | |
| 1136-1284, gnl|mm7|chr14 (50763438-50764956) | |
| 1136-1284, gnl|Mm7|chr14 (50764477-50764621) | |
| 1136-1284, gnl|oryCun1|scaffold_179870 (6348-8147) | |
| 1136-1284, gnl|panTro1|chr15 (22882396-22884222) | |
| 1136-1284, gnl|rheMac2|chr7 (87336321-87338163) | |
| 1136-1284, gnl|rn3|chr15 (34057041-34058556) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-1008, gnl|bosTau2|chr10 (11901183-11902190) | |
| 2-1008, gnl|canFam2|chr8 (7417150-7418892) | |
| 2-1008, gnl|dasNov1|scaffold_68109 (2763-4660) | |
| 2-1008, gnl|echTel1|scaffold_316052 (45961-44134) | |
| 2-1008, gnl|hg17|chr14 (23977303-23979129) | |
| 2-1008, gnl|Hg17|chr14 (23977671-23978653) | |
| 2-1008, gnl|loxAfr1|scaffold_9350 (67265-69146) | |
| 2-1008, gnl|mm7|chr14 (50763438-50764956) | |
| 2-1008, gnl|oryCun1|scaffold_179870 (6348-8147) | |
| 2-1008, gnl|panTro1|chr15 (22882396-22884222) | |
| 2-1008, gnl|rheMac2|chr7 (87336321-87338163) | |
| 2-1008, gnl|rn3|chr15 (34057041-34058556) | |
| 1136-1284, gnl|bosTau2|chr10 (11902181-11902327) | |
| 1136-1284, gnl|canFam2|chr8 (7417150-7418892) | |
| 1136-1284, gnl|dasNov1|scaffold_68109 (2763-4660) | |
| 1136-1284, gnl|echTel1|scaffold_316052 (45961-44134) | |
| 1136-1284, gnl|hg17|chr14 (23977303-23979129) | |
| 1136-1284, gnl|Hg17|chr14 (23978644-23978804) | |
| 1136-1284, gnl|loxAfr1|scaffold_9350 (67265-69146) | |
| 1136-1284, gnl|mm7|chr14 (50763438-50764956) | |
| 1136-1284, gnl|Mm7|chr14 (50764477-50764621) | |
| 1136-1284, gnl|oryCun1|scaffold_179870 (6348-8147) | |
| 1136-1284, gnl|panTro1|chr15 (22882396-22884222) | |
| 1136-1284, gnl|rheMac2|chr7 (87336321-87338163) | |
| 1136-1284, gnl|rn3|chr15 (34057041-34058556) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| pgl (0.236967) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| mga (0.160205) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| pgl (0.236967) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| mga (0.160205) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |