Ss1.1-Pig4-TMW8036G24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCGAGCAGGACACACCACTGCCTCCCTCCAACCCCAGACTCTCACTGGAAGAAGACG CTGAGCGGGTAGTCTCTGTCCTGCACCAGGCACGATGGCAGTGCGGGGCGCGTGGAGCCG AGCAGGACACACCACTGCCTCCCTCCAACCCCAGACTCTCACTGGAAGAAGACGCTGAGC GGGTAGTCTCTGTCCTGCACCAGGCACGATGGCAGAGAAAGTGCTGGTAACAGGTGGGGC TGGCTACATTGGCAGTCACACTGTGCTGGAGCTGCTGGAAGCAGGCTATTCGCCCGTGGT CATCGATAATTTCCATAACGCCATTCGTGGAGGGAGCTCCATGCCGGAGAGCTTGCGGCG GGTTCAGGAGCTGACAGGCCGCTCTGTGGAGTTTGAGGAGATGGACATCTTAGATCAGGC AGCCCTACAGCGTCTCTTTAAGAAGTACCACTTCGTGGCAGTCATCCACTTTGCCGGGCT CAAAGCTGTGGGCGAGTCGGTGCAGAAGCCTCTGGATTATTACAGGGTTAACCTGACAGG AACCATTCAGCTTCTGGAGATCATGAAGGCCCATGGGGTGAAGAACCTGGTGTTCAGCAG GGACCTGTGCCAGGCCGACAAGGCCTGGAATGCAGTGCTGCTGCGATACTTCAACCCCAT AGGCGCCCATGCCTCAGGCTGCATCGGTGAGGATCCCATTGAGGAAATCAATAACCTCAT GCCCTATGTCTCCCAGGTGGCGATCGGGCGACGAGAGGCACTGAATGTCTTTGGCAATGA CTATGACACGGAGGATGGCACAGGCGTCCGGGATTATATCCATGTCGTGGATCTAGCCAA GGGCCACATCGCAGCCTTGCGGAAGCTGAAGGAGCAGTGTGGCTGCCGGATCTACAACCT GGGCACGGGCACGGGCTATTCGGTGCTCCAGATGGTCCGGGCCATGGAGAAGGCCTCCGG GAAGAAGATCCCGTACAAGGTGGTGGCACGGCGGGAAGGAGATGTGGCTGCCTGTTATGC CAACCCCAGCCTGGCTCTCAAGGAGCTGGGCTGGACAGCAGCCTTAGGGCTGGACAGGAT GTGTGAAGATCTATGGCGCTGGCAGAAGCAGAATCCTTCAGGCTTTGGTGCACAGGCCTG AGATCCTCTGGGGCCAGAAAAGGAAGAGAAACAAATGCCTGCTCTCCAGCCTTCGGCACG AACCCTGGGGCCTCAGAGCCTCCCCTACCTCAGACCCCAGCTGGGCCCACTTGGCCCACC AGGCAAGAGGCCAAGGGCCCCACTGACCAGGTATCAGGGGTCTCTATTCCACAGGGTCCA GGAACCCATGAGGACAGGACCCCCAAGAGCGAGTGGGGGAAGCAGGACCCTGAGACACAG AACGCCTTCCTCCCAGGCGCTAACTCAGACCGCTCTGCAGGAGCTTTCCAAAGTATTTAC AATAAAACCCCTGCTGACACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCGAGCAGGACACACCACTGCCTCCCTCCAACCCCAGACTCTCACTGGAAGAAGACG CTGAGCGGGTAGTCTCTGTCCTGCACCAGGCACGATGGCAGTGCGGGGCGCGTGGAGCCG AGCAGGACACACCACTGCCTCCCTCCAACCCCAGACTCTCACTGGAAGAAGACGCTGAGC GGGTAGTCTCTGTCCTGCACCAGGCACGATGGCAGAGAAAGTGCTGGTAACAGGTGGGGC TGGCTACATTGGCAGTCACACTGTGCTGGAGCTGCTGGAAGCAGGCTATTCGCCCGTGGT CATCGATAATTTCCATAACGCCATTCGTGGAGGGAGCTCCATGCCGGAGAGCTTGCGGCG GGTTCAGGAGCTGACAGGCCGCTCTGTGGAGTTTGAGGAGATGGACATCTTAGATCAGGC AGCCCTACAGCGTCTCTTTAAGAAGTACCACTTCGTGGCAGTCATCCACTTTGCCGGGCT CAAAGCTGTGGGCGAGTCGGTGCAGAAGCCTCTGGATTATTACAGGGTTAACCTGACAGG AACCATTCAGCTTCTGGAGATCATGAAGGCCCATGGGGTGAAGAACCTGGTGTTCAGCAG GGACCTGTGCCAGGCCGACAAGGCCTGGAATGCAGTGCTGCTGCGATACTTCAACCCCAT AGGCGCCCATGCCTCAGGCTGCATCGGTGAGGATCCCATTGAGGAAATCAATAACCTCAT GCCCTATGTCTCCCAGGTGGCGATCGGGCGACGAGAGGCACTGAATGTCTTTGGCAATGA CTATGACACGGAGGATGGCACAGGCGTCCGGGATTATATCCATGTCGTGGATCTAGCCAA GGGCCACATCGCAGCCTTGCGGAAGCTGAAGGAGCAGTGTGGCTGCCGGATCTACAACCT GGGCACGGGCACGGGCTATTCGGTGCTCCAGATGGTCCGGGCCATGGAGAAGGCCTCCGG GAAGAAGATCCCGTACAAGGTGGTGGCACGGCGGGAAGGAGATGTGGCTGCCTGTTATGC CAACCCCAGCCTGGCTCTCAAGGAGCTGGGCTGGACAGCAGCCTTAGGGCTGGACAGGAT GTGTGAAGATCTATGGCGCTGGCAGAAGCAGAATCCTTCAGGCTTTGGTGCACAGGCCTG AGATCCTCTGGGGCCAGAAAAGGAAGAGAAACAAATGCCTGCTCTCCAGCCTTCGGCACG AACCCTGGGGCCTCAGAGCCTCCCCTACCTCAGACCCCAGCTGGGCCCACTTGGCCCACC AGGCAAGAGGCCAAGGGCCCCACTGACCAGGTATCAGGGGTCTCTATTCCACAGGGTCCA GGAACCCATGAGGACAGGACCCCCAAGAGCGAGTGGGGGAAGCAGGACCCTGAGACACAG AACGCCTTCCTCCCAGGCGCTAACTCAGACCGCTCTGCAGGAGCTTTCCAAAGTATTTAC AATAAAACCCCTGCTGACACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1083-1399, - strand, RNAz p=0.822328 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1083-1399, - strand, RNAz p=0.822328 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 185-330, gnl|bosTau2|chr2 (82400010-82400155) | |
| 185-330, gnl|canFam2|chr2 (78598331-78598194) | |
| 185-330, gnl|danRer3|chrUn (85915271-85915407) | |
| 185-330, gnl|dasNov1|scaffold_533 (91827-91964) | |
| 185-330, gnl|fr1|chrUn (68582897-68583020) | |
| 185-330, gnl|galGal2|chr23 (4992329-4992466) | |
| 185-330, gnl|hg17|chr1 (23870676-23870813) | |
| 185-330, gnl|Hg17|chr1 (23870829-23870682) | |
| 185-330, gnl|loxAfr1|scaffold_110173 (4496-4360) | |
| 185-330, gnl|mm7|chr4 (135343899-135343769) | |
| 185-330, gnl|Mm7|chr4 (135343751-135343894) | |
| 185-330, gnl|monDom2|scaffold_91 (311396-311537) | |
| 185-330, gnl|oryCun1|scaffold_134260 (3916-4050) | |
| 185-330, gnl|panTro1|chr1 (24249250-24249387) | |
| 185-330, gnl|rheMac2|chr1 (26407969-26408106) | |
| 185-330, gnl|rn3|chr5 (154757563-154757430) | |
| 185-330, gnl|tetNig1|chr10 (3065710-3065586) | |
| 185-330, gnl|xenTro1|scaffold_46 (1367064-1366938) | |
| 444-559, gnl|bosTau2|chr2 (82400515-82400630) | |
| 444-559, gnl|Hg17|chr1 (23870028-23869913) | |
| 444-559, gnl|Mm7|chr4 (135344438-135344553) | |
| 621-738, gnl|bosTau2|chr2 (82401291-82401408) | |
| 621-738, gnl|canFam2|chr2 (78599583-78599425) | |
| 621-738, gnl|danRer3|chrNA (210493668-210493526) | |
| 621-738, gnl|dasNov1|scaffold_533 (90490-90648) | |
| 621-738, gnl|fr1|chrUn (68581801-68581954) | |
| 621-738, gnl|galGal2|chr23 (4991432-4991567) | |
| 621-738, gnl|hg17|chr1 (23868804-23868958) | |
| 621-738, gnl|Hg17|chr1 (23868945-23868828) | |
| 621-738, gnl|loxAfr1|scaffold_154766 (4732-4574) | |
| 621-738, gnl|mm7|chr4 (135345389-135345237) | |
| 621-738, gnl|Mm7|chr4 (135345248-135345365) | |
| 621-738, gnl|monDom2|scaffold_91 (310074-310242) | |
| 621-738, gnl|oryCun1|scaffold_182196 (39741-39588) | |
| 621-738, gnl|panTro1|chr1 (24247378-24247532) | |
| 621-738, gnl|rheMac2|chr1 (26405828-26405980) | |
| 621-738, gnl|rn3|chr5 (154759186-154759035) | |
| 621-738, gnl|tetNig1|chr10 (3067086-3066939) | |
| 621-738, gnl|xenTro1|scaffold_46 (1369248-1369093) | |
| 1083-1462, gnl|bosTau2|chr2 (82402415-82402795) | |
| 1083-1462, gnl|Hg17|chr1 (23867803-23867397) | |
| 1083-1462, gnl|Mm7|chr4 (135346238-135346614) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 185-330, gnl|bosTau2|chr2 (82400010-82400155) | |
| 185-330, gnl|canFam2|chr2 (78598331-78598194) | |
| 185-330, gnl|danRer3|chrUn (85915271-85915407) | |
| 185-330, gnl|dasNov1|scaffold_533 (91827-91964) | |
| 185-330, gnl|fr1|chrUn (68582897-68583020) | |
| 185-330, gnl|galGal2|chr23 (4992329-4992466) | |
| 185-330, gnl|hg17|chr1 (23870676-23870813) | |
| 185-330, gnl|Hg17|chr1 (23870829-23870682) | |
| 185-330, gnl|loxAfr1|scaffold_110173 (4496-4360) | |
| 185-330, gnl|mm7|chr4 (135343899-135343769) | |
| 185-330, gnl|Mm7|chr4 (135343751-135343894) | |
| 185-330, gnl|monDom2|scaffold_91 (311396-311537) | |
| 185-330, gnl|oryCun1|scaffold_134260 (3916-4050) | |
| 185-330, gnl|panTro1|chr1 (24249250-24249387) | |
| 185-330, gnl|rheMac2|chr1 (26407969-26408106) | |
| 185-330, gnl|rn3|chr5 (154757563-154757430) | |
| 185-330, gnl|tetNig1|chr10 (3065710-3065586) | |
| 185-330, gnl|xenTro1|scaffold_46 (1367064-1366938) | |
| 444-559, gnl|bosTau2|chr2 (82400515-82400630) | |
| 444-559, gnl|Hg17|chr1 (23870028-23869913) | |
| 444-559, gnl|Mm7|chr4 (135344438-135344553) | |
| 621-738, gnl|bosTau2|chr2 (82401291-82401408) | |
| 621-738, gnl|canFam2|chr2 (78599583-78599425) | |
| 621-738, gnl|danRer3|chrNA (210493668-210493526) | |
| 621-738, gnl|dasNov1|scaffold_533 (90490-90648) | |
| 621-738, gnl|fr1|chrUn (68581801-68581954) | |
| 621-738, gnl|galGal2|chr23 (4991432-4991567) | |
| 621-738, gnl|hg17|chr1 (23868804-23868958) | |
| 621-738, gnl|Hg17|chr1 (23868945-23868828) | |
| 621-738, gnl|loxAfr1|scaffold_154766 (4732-4574) | |
| 621-738, gnl|mm7|chr4 (135345389-135345237) | |
| 621-738, gnl|Mm7|chr4 (135345248-135345365) | |
| 621-738, gnl|monDom2|scaffold_91 (310074-310242) | |
| 621-738, gnl|oryCun1|scaffold_182196 (39741-39588) | |
| 621-738, gnl|panTro1|chr1 (24247378-24247532) | |
| 621-738, gnl|rheMac2|chr1 (26405828-26405980) | |
| 621-738, gnl|rn3|chr5 (154759186-154759035) | |
| 621-738, gnl|tetNig1|chr10 (3067086-3066939) | |
| 621-738, gnl|xenTro1|scaffold_46 (1369248-1369093) | |
| 1083-1462, gnl|bosTau2|chr2 (82402415-82402795) | |
| 1083-1462, gnl|Hg17|chr1 (23867803-23867397) | |
| 1083-1462, gnl|Mm7|chr4 (135346238-135346614) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fce (0.271592) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |