Ss1.1-Pig4-TMW8036H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCACCCTTCTCTTCTTGCCGCCGGGGACTTCAGACTGAACCTTCCCGGGAAGAGTGGG GACTGCTGGTGCCCTGCGTCCCGGGAGCCTGCACCAACTTGGTTCCTCCATTAGTGGTGG GGAAGGGCTTATCCTCTTGTGTAGGACTCAGGCCCTCCCGCTGTCAGGATGAAGGCTCAG GGGGAAACCGAGGAGTCCGAAAAGCTGAGTAAGATGAGTTCTCTCTTGGAACGGCTCCAT GCAAAATTTAACCAAAATAGACCTTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTCATG GAAAAGAGGGTTGTGATGAGTTCTGGAGGTCACCAGCATTTGGTCAGCTGTTTGGAGACA TTGCAGAAAGCTCTCAAAGTAACATCTTTACCAGCAATGACTGACCGTTTGGAGTCTATA GCAAGACAGAATGGACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACG TCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAA GTGGCTCACCATGGGGAGAATCCTGTGAGCTGTCCAGAGCTTGTTCAGCAGCTAAGGGAA AAAAATTTTGATGAATTTTCTAAGCACCTTAAGGGTCTTGTTAATCTGTATAACCTTCCA GGGGACAACAAACTGAAGACTAAAATGTACTTGGCTCTCCAAAGCTTAGAACAGGATCTA TCTAAAATGGCAGTTATGTATTGGAAAGCAACTAATGCTGGTCCCTTGGATAAGATTCTT CATGGAAGTGTTGGCTATCTCACTCCAAGAAGTGGGGGTCATTTAATGAACTTGAAGTAT TATGCCTCTCCTTCTGACCTACTGGATGATAAGACCACATCCCCTATCATTTTGCATGAG AATAATGTTCCTCGATCTTTGGGCATGAATGCATCAGTGACAATTGAAGGAACATCTGCT ATGTATAAACTCCCAATTGCACCATTAATTATGGGGTCTCATCCAGTTGACAACAAATGG ACTCCCTCCTTTTCCTCAATCACCAGTGCCAACAGTGTTGATCTTCCTGCCTGTTTCTTC TTGAAATTTCCCCAGCCAATCCCAGTATCTAGAGCATTTGTTCAGAAACTTCAGAACTGC ACAGGAATTCCTTTGTTTGAAACCCAGCCAACTTATGTACCCCTTTATGAACTGATCACT CAGTTTGAACTGTCAAAGGACCCTGACCCTGTACCTTTGAATCATAACATGCGATTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCACCCTTCTCTTCTTGCCGCCGGGGACTTCAGACTGAACCTTCCCGGGAAGAGTGGG GACTGCTGGTGCCCTGCGTCCCGGGAGCCTGCACCAACTTGGTTCCTCCATTAGTGGTGG GGAAGGGCTTATCCTCTTGTGTAGGACTCAGGCCCTCCCGCTGTCAGGATGAAGGCTCAG GGGGAAACCGAGGAGTCCGAAAAGCTGAGTAAGATGAGTTCTCTCTTGGAACGGCTCCAT GCAAAATTTAACCAAAATAGACCTTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTCATG GAAAAGAGGGTTGTGATGAGTTCTGGAGGTCACCAGCATTTGGTCAGCTGTTTGGAGACA TTGCAGAAAGCTCTCAAAGTAACATCTTTACCAGCAATGACTGACCGTTTGGAGTCTATA GCAAGACAGAATGGACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACG TCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAA GTGGCTCACCATGGGGAGAATCCTGTGAGCTGTCCAGAGCTTGTTCAGCAGCTAAGGGAA AAAAATTTTGATGAATTTTCTAAGCACCTTAAGGGTCTTGTTAATCTGTATAACCTTCCA GGGGACAACAAACTGAAGACTAAAATGTACTTGGCTCTCCAAAGCTTAGAACAGGATCTA TCTAAAATGGCAGTTATGTATTGGAAAGCAACTAATGCTGGTCCCTTGGATAAGATTCTT CATGGAAGTGTTGGCTATCTCACTCCAAGAAGTGGGGGTCATTTAATGAACTTGAAGTAT TATGCCTCTCCTTCTGACCTACTGGATGATAAGACCACATCCCCTATCATTTTGCATGAG AATAATGTTCCTCGATCTTTGGGCATGAATGCATCAGTGACAATTGAAGGAACATCTGCT ATGTATAAACTCCCAATTGCACCATTAATTATGGGGTCTCATCCAGTTGACAACAAATGG ACTCCCTCCTTTTCCTCAATCACCAGTGCCAACAGTGTTGATCTTCCTGCCTGTTTCTTC TTGAAATTTCCCCAGCCAATCCCAGTATCTAGAGCATTTGTTCAGAAACTTCAGAACTGC ACAGGAATTCCTTTGTTTGAAACCCAGCCAACTTATGTACCCCTTTATGAACTGATCACT CAGTTTGAACTGTCAAAGGACCCTGACCCTGTACCTTTGAATCATAACATGCGATTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-193, + strand, RNAz p=0.794628 | |
| 434-567, - strand, RNAz p=0.967487 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-193, + strand, RNAz p=0.794628 | |
| 434-567, - strand, RNAz p=0.967487 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004774, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-193, gnl|bosTau2|chr19 (32948431-32948239) | |
| 1-193, gnl|Hg17|chr17 (34861010-34860817) | |
| 1-193, gnl|Mm7|chr11 (98302291-98302098) | |
| 434-567, gnl|bosTau2|chr19 (32942188-32942055) | |
| 434-567, gnl|Hg17|chr17 (34850298-34850165) | |
| 434-567, gnl|Mm7|chr11 (98289189-98289056) | |
| 1019-1145, gnl|bosTau2|chr19 (32935897-32935771) | |
| 1019-1145, gnl|canFam2|chr9 (26333187-26333042) | |
| 1019-1145, gnl|dasNov1|scaffold_9650 (44673-44818) | |
| 1019-1145, gnl|echTel1|scaffold_306575 (57365-57220) | |
| 1019-1145, gnl|galGal2|chr27 (2643864-2644016) | |
| 1019-1145, gnl|hg17|chr17 (34833471-34833616) | |
| 1019-1145, gnl|Hg17|chr17 (34833601-34833475) | |
| 1019-1145, gnl|loxAfr1|scaffold_52439 (10267-10412) | |
| 1019-1145, gnl|mm7|chr11 (98275733-98275878) | |
| 1019-1145, gnl|Mm7|chr11 (98275863-98275737) | |
| 1019-1145, gnl|monDom2|scaffold_18 (48389724-48389869) | |
| 1019-1145, gnl|oryCun1|scaffold_204597 (42672-42817) | |
| 1019-1145, gnl|panTro1|chr19 (38068553-38068698) | |
| 1019-1145, gnl|rheMac2|chr16 (49504591-49504736) | |
| 1019-1145, gnl|rn3|chr10 (86944931-86945076) | |
| 1019-1145, gnl|tetNig1|chr2_random (178321-178458) | |
| 1019-1145, gnl|xenTro1|scaffold_334 (119572-119432) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-193, gnl|bosTau2|chr19 (32948431-32948239) | |
| 1-193, gnl|Hg17|chr17 (34861010-34860817) | |
| 1-193, gnl|Mm7|chr11 (98302291-98302098) | |
| 434-567, gnl|bosTau2|chr19 (32942188-32942055) | |
| 434-567, gnl|Hg17|chr17 (34850298-34850165) | |
| 434-567, gnl|Mm7|chr11 (98289189-98289056) | |
| 1019-1145, gnl|bosTau2|chr19 (32935897-32935771) | |
| 1019-1145, gnl|canFam2|chr9 (26333187-26333042) | |
| 1019-1145, gnl|dasNov1|scaffold_9650 (44673-44818) | |
| 1019-1145, gnl|echTel1|scaffold_306575 (57365-57220) | |
| 1019-1145, gnl|galGal2|chr27 (2643864-2644016) | |
| 1019-1145, gnl|hg17|chr17 (34833471-34833616) | |
| 1019-1145, gnl|Hg17|chr17 (34833601-34833475) | |
| 1019-1145, gnl|loxAfr1|scaffold_52439 (10267-10412) | |
| 1019-1145, gnl|mm7|chr11 (98275733-98275878) | |
| 1019-1145, gnl|Mm7|chr11 (98275863-98275737) | |
| 1019-1145, gnl|monDom2|scaffold_18 (48389724-48389869) | |
| 1019-1145, gnl|oryCun1|scaffold_204597 (42672-42817) | |
| 1019-1145, gnl|panTro1|chr19 (38068553-38068698) | |
| 1019-1145, gnl|rheMac2|chr16 (49504591-49504736) | |
| 1019-1145, gnl|rn3|chr10 (86944931-86945076) | |
| 1019-1145, gnl|tetNig1|chr2_random (178321-178458) | |
| 1019-1145, gnl|xenTro1|scaffold_334 (119572-119432) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |