Non-Coding RNA Search

Ss1.1-Pig4-TMW8036H11.3

Sequence:


               
               AAATTGCTTTCATTGATAAAAATAGAGATCTCTATATCACTTCAGTGAAACGATTTGGGA
AGGAAGAACAAATTATCAAACTTGGAACAATGGTGCATACTTTGGCATGGAGTGACACAT
GCAATATCCTTTGTGGACTTCAGGATACTCGATTTACAGTGTGGTACTACCCCAATACGG
TTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTA
GTAAAAATCCCCGTATTGTGAGTTTTGTTGGAAATCAGGTAACTGTAAGAAGAGCTGATG
GCTCACTGGTTCACATCAGCATATCACCATATCCTGCGATTCTCCATGAATATGTAAGCA
GCTCAAAATGGGAAGATGCTGTAAGACTTTGCCGTTTTGTTAAGGAACAAACCATATGGG
CTTGCCTAGCTGCTATGGCAGTTGCTAATCAAGATATGACTACTGCAGAAATAGCCTATG
CAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTA
AAGAATCAAAAATGGCCCACATGTTAATGTTTAGTGGGAACATACAGGAGGCTGAAATAG
TACTTCTTCAGGCTGGCCTTGTTTATCAAGCGATTCAGATCAATATTAATCTCTACAACT
GGGAGAGGGCACTTGAATTGGCAGTAAAATACAAAACACATGTTGATACAGTGCTTGCTT
ACCGTCAGAAGTTTTTAGAGACCTTTGGTAAGCAGGAAACTAATAAGCGATACCTGCAGT
ATGCAGAAGGTCTGCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAAATGGAAATTA
CTAAAGAACGAGAACGATCATCAAGCAGCCAGCCCAGCAAGAATTTCAGTCTAAAGCACT
AAATGCCATGCTTACCTTTAAGTTTTACCTTTTGAAACTGATTCTGATTAACCAAGGATA
AGCATGTTTTCAGTGCTAAAGAAAAAGGCAGAATCTTGAAGTATAAGTACTTGCTGTGTA
TTTAATACCAAAAGTATATTCAGAAAGACTAAGTACAGAATAATGATGTAATTTGATGTA
ATTTTATATTTTTAGTATAATAAGCAGAAAAACATTCCTATATATTTATGATATATCCAT
GTGGTCTTGCTTACATTCCAGTTTTCTGTCCATTATTTTATCCCTGAATCTTCAGTATGA
ACAAATATTAATGCTGATAATAAAACATTGAACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTGCTTTCATTGATAAAAATAGAGATCTCTATATCACTTCAGTGAAACGATTTGGGA
AGGAAGAACAAATTATCAAACTTGGAACAATGGTGCATACTTTGGCATGGAGTGACACAT
GCAATATCCTTTGTGGACTTCAGGATACTCGATTTACAGTGTGGTACTACCCCAATACGG
TTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTA
GTAAAAATCCCCGTATTGTGAGTTTTGTTGGAAATCAGGTAACTGTAAGAAGAGCTGATG
GCTCACTGGTTCACATCAGCATATCACCATATCCTGCGATTCTCCATGAATATGTAAGCA
GCTCAAAATGGGAAGATGCTGTAAGACTTTGCCGTTTTGTTAAGGAACAAACCATATGGG
CTTGCCTAGCTGCTATGGCAGTTGCTAATCAAGATATGACTACTGCAGAAATAGCCTATG
CAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTA
AAGAATCAAAAATGGCCCACATGTTAATGTTTAGTGGGAACATACAGGAGGCTGAAATAG
TACTTCTTCAGGCTGGCCTTGTTTATCAAGCGATTCAGATCAATATTAATCTCTACAACT
GGGAGAGGGCACTTGAATTGGCAGTAAAATACAAAACACATGTTGATACAGTGCTTGCTT
ACCGTCAGAAGTTTTTAGAGACCTTTGGTAAGCAGGAAACTAATAAGCGATACCTGCAGT
ATGCAGAAGGTCTGCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAAATGGAAATTA
CTAAAGAACGAGAACGATCATCAAGCAGCCAGCCCAGCAAGAATTTCAGTCTAAAGCACT
AAATGCCATGCTTACCTTTAAGTTTTACCTTTTGAAACTGATTCTGATTAACCAAGGATA
AGCATGTTTTCAGTGCTAAAGAAAAAGGCAGAATCTTGAAGTATAAGTACTTGCTGTGTA
TTTAATACCAAAAGTATATTCAGAAAGACTAAGTACAGAATAATGATGTAATTTGATGTA
ATTTTATATTTTTAGTATAATAAGCAGAAAAACATTCCTATATATTTATGATATATCCAT
GTGGTCTTGCTTACATTCCAGTTTTCTGTCCATTATTTTATCCCTGAATCTTCAGTATGA
ACAAATATTAATGCTGATAATAAAACATTGAACTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61835402|ref|XP_601991.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835402|ref|XP_601991.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               666-791, gnl|bosTau2|chr1 (67701557-67701432)
               

               
               666-791, gnl|Hg17|chr3 (161469028-161468903)
               

               
               666-791, gnl|Mm7|chr3 (68999616-68999491)
               


               
               792-1236, gnl|bosTau2|chr1 (67694342-67693899)
               

               
               792-1236, gnl|Hg17|chr3 (161459125-161458676)
               

               
               792-1236, gnl|Mm7|chr3 (68995187-68994655)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               666-791, gnl|bosTau2|chr1 (67701557-67701432)
               

               
               666-791, gnl|Hg17|chr3 (161469028-161468903)
               

               
               666-791, gnl|Mm7|chr3 (68999616-68999491)
               


               
               792-1236, gnl|bosTau2|chr1 (67694342-67693899)
               

               
               792-1236, gnl|Hg17|chr3 (161459125-161458676)
               

               
               792-1236, gnl|Mm7|chr3 (68995187-68994655)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               sug (0.381874)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	666-791, gnl\|bosTau2\|chr1 (67701557-67701432)
	666-791, gnl\|Hg17\|chr3 (161469028-161468903)
	666-791, gnl\|Mm7\|chr3 (68999616-68999491)

	792-1236, gnl\|bosTau2\|chr1 (67694342-67693899)
	792-1236, gnl\|Hg17\|chr3 (161459125-161458676)
	792-1236, gnl\|Mm7\|chr3 (68995187-68994655)

	sug (0.381874)
	pla (0.267344)
	thg (0.253582)
	tes (0.207814)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	kid (0.129735)
	ova (0.129132)
	spc (0.113366)
	cty (0.10408)