Non-Coding RNA Search

Ss1.1-Pig4-TMW8036H18.3

Sequence:


               
               TTCTCTGTAACTCTTATTAGATAAATTTGCCTTATGTCTAAAATACATGTTTTTGTTGTT
GTGTTGTTACTTTTGTATTACATAATGTTGCTGTTTTCAGAATTCATGGCAAATATCATT
GGGTAACCTGGATACTTTGTTAGATGAATATTCAGCTATATCTGCAAATTAATATCTGAA
AAGCCATTAGGAAGGAGTCATGGTGATATATTTTTTTTCTTTTTCTTTATTTTGAAATGT
TTTGGCATCACACCTAAACATTTAAGAAAGATTGACCAAGCATGTTCTCCTTAGGCTACC
TATATTTAATGATAGAATATTAAATTACAGTTCCTAGGTTTGTTAACAGTTAAATTTAGT
TATGCTTTTATGCACTTTTAAAATATATAAAGTTCAAAAAAACTGAGGAACATTTTTAGT
TTTAAGGCTTAGAGATTCAAAATGAATGAGAAAAGCTTTTTTTTTAATAAAAGGAAAAAG
GACCTAATATAAGGCAGTTTTTAACAATGTAGAAGTAATTGCCCAAATTTAATTCCAGCA
GACAAGCCATTCGAACAGGTATTTGCTATTATTGGACATTAGGTCGTTTTTTTTTTTCCT
TCAATAAAAAGGGAACATGTATTCATTTACATTCCAAGCTATTAGGAAAAGGAGACTATT
TTATCGTACTGGCTTTCATCTGATGTTTTTGCTTGAAGATCTGATGTGCTATAATTCCAT
GAATTAAAAATAATAAAGATTATCATTCTGGAGCTAAAGACTTTTGATATATTTCCAAAA
CCAAAAGTAATTTCAGGAAGCATTGATAAGTTGATGTTATAATTAATCTAATTTTGTATA
GTTTTTGTAAATAAATTAACATCCTGCCATAATTATGGATGCTTTTTGCCCCACCACTAA
TTGTAGTTGTTTGATACCAAAATGAATTTAGGTTGAGACTCTTAAAATAAATTAATTTTT
TTTCTAAAATATAAGTCTGGAACTGTTGTTTTTATATTTGCTAACAAATACAGTATATTT
TACATATAAACCATGCTCTAGTGTCATATGAGGATTTTCCTTATACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCTGTAACTCTTATTAGATAAATTTGCCTTATGTCTAAAATACATGTTTTTGTTGTT
GTGTTGTTACTTTTGTATTACATAATGTTGCTGTTTTCAGAATTCATGGCAAATATCATT
GGGTAACCTGGATACTTTGTTAGATGAATATTCAGCTATATCTGCAAATTAATATCTGAA
AAGCCATTAGGAAGGAGTCATGGTGATATATTTTTTTTCTTTTTCTTTATTTTGAAATGT
TTTGGCATCACACCTAAACATTTAAGAAAGATTGACCAAGCATGTTCTCCTTAGGCTACC
TATATTTAATGATAGAATATTAAATTACAGTTCCTAGGTTTGTTAACAGTTAAATTTAGT
TATGCTTTTATGCACTTTTAAAATATATAAAGTTCAAAAAAACTGAGGAACATTTTTAGT
TTTAAGGCTTAGAGATTCAAAATGAATGAGAAAAGCTTTTTTTTTAATAAAAGGAAAAAG
GACCTAATATAAGGCAGTTTTTAACAATGTAGAAGTAATTGCCCAAATTTAATTCCAGCA
GACAAGCCATTCGAACAGGTATTTGCTATTATTGGACATTAGGTCGTTTTTTTTTTTCCT
TCAATAAAAAGGGAACATGTATTCATTTACATTCCAAGCTATTAGGAAAAGGAGACTATT
TTATCGTACTGGCTTTCATCTGATGTTTTTGCTTGAAGATCTGATGTGCTATAATTCCAT
GAATTAAAAATAATAAAGATTATCATTCTGGAGCTAAAGACTTTTGATATATTTCCAAAA
CCAAAAGTAATTTCAGGAAGCATTGATAAGTTGATGTTATAATTAATCTAATTTTGTATA
GTTTTTGTAAATAAATTAACATCCTGCCATAATTATGGATGCTTTTTGCCCCACCACTAA
TTGTAGTTGTTTGATACCAAAATGAATTTAGGTTGAGACTCTTAAAATAAATTAATTTTT
TTTCTAAAATATAAGTCTGGAACTGTTGTTTTTATATTTGCTAACAAATACAGTATATTT
TACATATAAACCATGCTCTAGTGTCATATGAGGATTTTCCTTATACAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               8-386, gnl|bosTau2|chr8 (10772163-10772520)
               

               
               8-386, gnl|Hg17|chr9 (26832197-26831846)
               

               
               8-386, gnl|Mm7|chr4 (93893536-93893181)
               


               
               398-1067, gnl|bosTau2|chr8 (10772561-10773223)
               

               
               398-1067, gnl|Hg17|chr9 (26831802-26831151)
               

               
               398-1067, gnl|Mm7|chr4 (93893138-93892489)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-386, gnl|bosTau2|chr8 (10772163-10772520)
               

               
               8-386, gnl|Hg17|chr9 (26832197-26831846)
               

               
               8-386, gnl|Mm7|chr4 (93893536-93893181)
               


               
               398-1067, gnl|bosTau2|chr8 (10772561-10773223)
               

               
               398-1067, gnl|Hg17|chr9 (26831802-26831151)
               

               
               398-1067, gnl|Mm7|chr4 (93893138-93892489)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	8-386, gnl\|bosTau2\|chr8 (10772163-10772520)
	8-386, gnl\|Hg17\|chr9 (26832197-26831846)
	8-386, gnl\|Mm7\|chr4 (93893536-93893181)

	398-1067, gnl\|bosTau2\|chr8 (10772561-10773223)
	398-1067, gnl\|Hg17\|chr9 (26831802-26831151)
	398-1067, gnl\|Mm7\|chr4 (93893138-93892489)

	ret (0.257467)
	fcc (0.197785)
	sag (0.182715)
	tra (0.123092)
	ecc (0.115035)