Ss1.1-Pig4-TMW8036I01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTGCTATCGGGGACTCTGCTGGCAGAAGCTGTCACATGGCTCTTCACCAGCGTGCTG AAGGGCTTACAGACACACGGGCAGCATGACGGCTGCATGGCTTCCTTGGTCCACCTGGCC TTCCAGACGTATGAGGCGCTGCGTCCCAGGTACGTGGAGATAAGAGCTGTGATGGAGCAG ATCCCTGACATTCAGAAGGAGTCTCTGGACCAGTTTGACTGCAAGCTTTTGAACCCCTCT CTGCAGAAAGCGGCTGATAAGCGCCGGAAGGACCAATTCAAACGCCTGATTGCTGGGTGC ATCGGGAAACCCTTGGGCGAGCAGTTCCGAAAAGAAGTTCACATTAAGAATCTTCCTTCA CTTTTCAAAAAAACAAAGCCAACCCATGACTCGGATGCACTGGACAACGACGAGGGCGGC CTGGCCACCATCTTTGAACCCTGAATCAAGCTTTCAGGCATCCTTCTTTGACCTTTATTG TCATCTCTTCTTCCCCTTTGTAGCTAATCTCTAGGCCCCTCTCCACTGCACCTCACTTTC CACCTTCGTCAGCCTGGAGAGAGGTCCAGGTCTGGAGCTGGAGAGAGTGGGCCCTGTAGT AGGGCCAGAAGTCATTATACTAAAGTCTCAAGAAAGGGAGGTAGGGCTTCTACCGTTCTG TCTAGATTTCCCAGGTCTCTCCCATTCTACTTGGAGTTTTGGCTTTTCCAAAAGTGAGAA GCCACAGCAGAGTGGCCCCTATCCCCAAGCCCTCTCACCCCCAGGCAGCCGTATACACCT GTGCAGAGTGACAACCAGGGGGCTCTGTACCTGATGCTGTACTGGCTGGGCTTGCGGCCA GGGCTCAGCCCTGAACTACTTGTGCCAGAGTTTCTCTTGGACCTTTGAGAAATCCCACCA AGCCCCCTTGCTGCTGGGCTGGCTGGGAACCCTCCCCATCCCCCAGGGGTGTATCTGGGT CAGGTGCTGAGTGAACTGAATTTGGCCAATTCCCACTTTGTTTTGAGCAAGAATCTGATG GGCTCCATGGTACAGGCTAAGCTCTGGGCACAGTGTCACGATAGTACCTTCAGGGACCAG GGCTGGGCAGGGGCCGTAGTGTTCTCTGATATCCCTTAGAGCTCACACATTTTGTCCTTC CGTGAATGACCCTTCAGTGTGGTTTCCCCAGCCCCCAGGGTCCACTCAGGCACAAGAGCC ACAGTACCCTCTCTAGTGTCACGTGATGCCGTTGGCATTTAAGGATAATCCAGACCAACT AGGCTACATCTGTGACAGCAGCTAGCAAAGCCACTGGTCTCCTCTCCTAGCTGAGTCCAG GTGCCTTCAAAGTCTCATGCTCTTTCAGACCCCCCTGGTCACCTCCTTCCTGGGCCATTT CTAAAAAAAAAAAAAAAAAAAAAAATGCCTTCCCATCACAACCTGTATTGTGAGTCTCCA GTCTGTTCTAGATGTCACTGGATGGCCCCGTAAGTAGAGGGGACATGGATATGGGACCCC AGTCTTGAGGTCACTGCCAGCCATAGACAGGCTTGCTCCATACTGAAACCACAGCATGTG TCCAGGTGCTCTGCACAGGCTGGGCACCGAGCCAATCCACCAACCAGGGTTTCTGCGAGG ACCGATGGAGCAGTGTGAGCCGAAGCTAGTTTTTAGCTGGTGTGGCCCCAGGCAGGGTAG AATCAGGAAGAAGCGAAGCTGGGGAAATGGCCTAGAGTTCCTTGTAGCTCTTCCCTGGCA CAGACTTGCTCCGCGCCCTCTTTTGGGTGGTGCATTGGGCTTCTTACCAACTGAGGGCAT CTCAGCATGTTTTCCTCCACACTTGTTAGCTGCCTACTCTCCTCTGCGGTGGGGCTGTGG AGGGTATAGTTGTATTTATTGTGTTGTAATATTTTTAACATCCTGTGATTTCATGCTAGA AGTTTTCTATTGTTTATAGAAACTTTTTGTAGAAACGGTAACTCGAAAGCACATCTGCAT GTCAGTAAAAATCTCAAATTTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTGCTATCGGGGACTCTGCTGGCAGAAGCTGTCACATGGCTCTTCACCAGCGTGCTG AAGGGCTTACAGACACACGGGCAGCATGACGGCTGCATGGCTTCCTTGGTCCACCTGGCC TTCCAGACGTATGAGGCGCTGCGTCCCAGGTACGTGGAGATAAGAGCTGTGATGGAGCAG ATCCCTGACATTCAGAAGGAGTCTCTGGACCAGTTTGACTGCAAGCTTTTGAACCCCTCT CTGCAGAAAGCGGCTGATAAGCGCCGGAAGGACCAATTCAAACGCCTGATTGCTGGGTGC ATCGGGAAACCCTTGGGCGAGCAGTTCCGAAAAGAAGTTCACATTAAGAATCTTCCTTCA CTTTTCAAAAAAACAAAGCCAACCCATGACTCGGATGCACTGGACAACGACGAGGGCGGC CTGGCCACCATCTTTGAACCCTGAATCAAGCTTTCAGGCATCCTTCTTTGACCTTTATTG TCATCTCTTCTTCCCCTTTGTAGCTAATCTCTAGGCCCCTCTCCACTGCACCTCACTTTC CACCTTCGTCAGCCTGGAGAGAGGTCCAGGTCTGGAGCTGGAGAGAGTGGGCCCTGTAGT AGGGCCAGAAGTCATTATACTAAAGTCTCAAGAAAGGGAGGTAGGGCTTCTACCGTTCTG TCTAGATTTCCCAGGTCTCTCCCATTCTACTTGGAGTTTTGGCTTTTCCAAAAGTGAGAA GCCACAGCAGAGTGGCCCCTATCCCCAAGCCCTCTCACCCCCAGGCAGCCGTATACACCT GTGCAGAGTGACAACCAGGGGGCTCTGTACCTGATGCTGTACTGGCTGGGCTTGCGGCCA GGGCTCAGCCCTGAACTACTTGTGCCAGAGTTTCTCTTGGACCTTTGAGAAATCCCACCA AGCCCCCTTGCTGCTGGGCTGGCTGGGAACCCTCCCCATCCCCCAGGGGTGTATCTGGGT CAGGTGCTGAGTGAACTGAATTTGGCCAATTCCCACTTTGTTTTGAGCAAGAATCTGATG GGCTCCATGGTACAGGCTAAGCTCTGGGCACAGTGTCACGATAGTACCTTCAGGGACCAG GGCTGGGCAGGGGCCGTAGTGTTCTCTGATATCCCTTAGAGCTCACACATTTTGTCCTTC CGTGAATGACCCTTCAGTGTGGTTTCCCCAGCCCCCAGGGTCCACTCAGGCACAAGAGCC ACAGTACCCTCTCTAGTGTCACGTGATGCCGTTGGCATTTAAGGATAATCCAGACCAACT AGGCTACATCTGTGACAGCAGCTAGCAAAGCCACTGGTCTCCTCTCCTAGCTGAGTCCAG GTGCCTTCAAAGTCTCATGCTCTTTCAGACCCCCCTGGTCACCTCCTTCCTGGGCCATTT CTAAAAAAAAAAAAAAAAAAAAAAATGCCTTCCCATCACAACCTGTATTGTGAGTCTCCA GTCTGTTCTAGATGTCACTGGATGGCCCCGTAAGTAGAGGGGACATGGATATGGGACCCC AGTCTTGAGGTCACTGCCAGCCATAGACAGGCTTGCTCCATACTGAAACCACAGCATGTG TCCAGGTGCTCTGCACAGGCTGGGCACCGAGCCAATCCACCAACCAGGGTTTCTGCGAGG ACCGATGGAGCAGTGTGAGCCGAAGCTAGTTTTTAGCTGGTGTGGCCCCAGGCAGGGTAG AATCAGGAAGAAGCGAAGCTGGGGAAATGGCCTAGAGTTCCTTGTAGCTCTTCCCTGGCA CAGACTTGCTCCGCGCCCTCTTTTGGGTGGTGCATTGGGCTTCTTACCAACTGAGGGCAT CTCAGCATGTTTTCCTCCACACTTGTTAGCTGCCTACTCTCCTCTGCGGTGGGGCTGTGG AGGGTATAGTTGTATTTATTGTGTTGTAATATTTTTAACATCCTGTGATTTCATGCTAGA AGTTTTCTATTGTTTATAGAAACTTTTTGTAGAAACGGTAACTCGAAAGCACATCTGCAT GTCAGTAAAAATCTCAAATTTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 505-617, - strand, RNAz p=0.624418 | |
| 547-684, - strand, RNAz p=0.999276 | |
| 920-1126, - strand, RNAz p=0.802318 | |
| 1072-1191, + strand, RNAz p=0.970995 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 505-617, - strand, RNAz p=0.624418 | |
| 547-684, - strand, RNAz p=0.999276 | |
| 920-1126, - strand, RNAz p=0.802318 | |
| 1072-1191, + strand, RNAz p=0.970995 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK127513, - | |
| 5' of AK127513, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr23 (17339250-17339110) | |
| 1-141, gnl|canFam2|chr12 (14988904-14989094) | |
| 1-141, gnl|danRer3|chrNA (20128412-20128221) | |
| 1-141, gnl|dasNov1|scaffold_4458 (43923-44113) | |
| 1-141, gnl|echTel1|scaffold_308664 (54675-54861) | |
| 1-141, gnl|fr1|chrUn (90625702-90625879) | |
| 1-141, gnl|galGal2|chr3 (27209695-27209474) | |
| 1-141, gnl|hg17|chr6 (43600542-43600733) | |
| 1-141, gnl|Hg17|chr6 (43600687-43600547) | |
| 1-141, gnl|loxAfr1|scaffold_7045 (2777-2964) | |
| 1-141, gnl|mm7|chr17 (44370965-44370771) | |
| 1-141, gnl|Mm7|chr17 (44370818-44370958) | |
| 1-141, gnl|monDom2|scaffold_0 (198017572-198017319) | |
| 1-141, gnl|oryCun1|scaffold_94417 (13839-14027) | |
| 1-141, gnl|panTro1|chr5 (44200002-44200193) | |
| 1-141, gnl|rheMac2|chr4 (43426382-43426573) | |
| 1-141, gnl|rn3|chr9 (10302021-10302189) | |
| 1-141, gnl|tetNig1|chr17 (5648276-5648122) | |
| 1-141, gnl|xenTro1|scaffold_1101 (9864-10043) | |
| 306-1503, gnl|bosTau2|chr23 (17338619-17337439) | |
| 306-1503, gnl|canFam2|chr12 (14986823-14987983) | |
| 306-1503, gnl|dasNov1|scaffold_4458 (41813-42939) | |
| 306-1503, gnl|echTel1|scaffold_308664 (52868-53699) | |
| 306-1503, gnl|hg17|chr6 (43598195-43599317) | |
| 306-1503, gnl|Hg17|chr6 (43599722-43598506) | |
| 306-1503, gnl|loxAfr1|scaffold_7045 (779-1833) | |
| 306-1503, gnl|mm7|chr17 (44372868-44371937) | |
| 306-1503, gnl|Mm7|chr17 (44371537-44372599) | |
| 306-1503, gnl|monDom2|scaffold_0 (198019464-198018488) | |
| 306-1503, gnl|oryCun1|scaffold_94417 (11924-12961) | |
| 306-1503, gnl|panTro1|chr5 (44197657-44198778) | |
| 306-1503, gnl|rheMac2|chr4 (43424033-43425154) | |
| 306-1503, gnl|rn3|chr9 (10300212-10301076) | |
| 1558-2004, gnl|bosTau2|chr23 (17337427-17336990) | |
| 1558-2004, gnl|Hg17|chr6 (43598494-43598057) | |
| 1558-2004, gnl|Mm7|chr17 (44372608-44372999) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr23 (17339250-17339110) | |
| 1-141, gnl|canFam2|chr12 (14988904-14989094) | |
| 1-141, gnl|danRer3|chrNA (20128412-20128221) | |
| 1-141, gnl|dasNov1|scaffold_4458 (43923-44113) | |
| 1-141, gnl|echTel1|scaffold_308664 (54675-54861) | |
| 1-141, gnl|fr1|chrUn (90625702-90625879) | |
| 1-141, gnl|galGal2|chr3 (27209695-27209474) | |
| 1-141, gnl|hg17|chr6 (43600542-43600733) | |
| 1-141, gnl|Hg17|chr6 (43600687-43600547) | |
| 1-141, gnl|loxAfr1|scaffold_7045 (2777-2964) | |
| 1-141, gnl|mm7|chr17 (44370965-44370771) | |
| 1-141, gnl|Mm7|chr17 (44370818-44370958) | |
| 1-141, gnl|monDom2|scaffold_0 (198017572-198017319) | |
| 1-141, gnl|oryCun1|scaffold_94417 (13839-14027) | |
| 1-141, gnl|panTro1|chr5 (44200002-44200193) | |
| 1-141, gnl|rheMac2|chr4 (43426382-43426573) | |
| 1-141, gnl|rn3|chr9 (10302021-10302189) | |
| 1-141, gnl|tetNig1|chr17 (5648276-5648122) | |
| 1-141, gnl|xenTro1|scaffold_1101 (9864-10043) | |
| 306-1503, gnl|bosTau2|chr23 (17338619-17337439) | |
| 306-1503, gnl|canFam2|chr12 (14986823-14987983) | |
| 306-1503, gnl|dasNov1|scaffold_4458 (41813-42939) | |
| 306-1503, gnl|echTel1|scaffold_308664 (52868-53699) | |
| 306-1503, gnl|hg17|chr6 (43598195-43599317) | |
| 306-1503, gnl|Hg17|chr6 (43599722-43598506) | |
| 306-1503, gnl|loxAfr1|scaffold_7045 (779-1833) | |
| 306-1503, gnl|mm7|chr17 (44372868-44371937) | |
| 306-1503, gnl|Mm7|chr17 (44371537-44372599) | |
| 306-1503, gnl|monDom2|scaffold_0 (198019464-198018488) | |
| 306-1503, gnl|oryCun1|scaffold_94417 (11924-12961) | |
| 306-1503, gnl|panTro1|chr5 (44197657-44198778) | |
| 306-1503, gnl|rheMac2|chr4 (43424033-43425154) | |
| 306-1503, gnl|rn3|chr9 (10300212-10301076) | |
| 1558-2004, gnl|bosTau2|chr23 (17337427-17336990) | |
| 1558-2004, gnl|Hg17|chr6 (43598494-43598057) | |
| 1558-2004, gnl|Mm7|chr17 (44372608-44372999) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| pla (0.401016) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| eye (0.341006) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| ece (0.229305) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| eye (0.341006) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| ece (0.229305) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| nbm (0.0993246) |