Non-Coding RNA Search

Ss1.1-Pig4-TMW8036I11.3

Sequence:


               
               GGGGCTGAATTGGAGTTACAGCCGCCGGCCTACACCACAGCCACGACAACATCAGATCCA
AGCCACGTCTGCGATCTATACCACAGCTCAAGGCAACGCCTGATCCTTAACGCGCTGATG
GAGACCAGGGATCAAACCTGCATCCTCATGGATACTAGTCCTATACATTTCTGCTGAGAG
TCACGATGGGAACTCCCCTTACAGCTATTCTTATTTCCTGATGTAGATTATTTTTTTTTT
CCTTCCAGGGAAGGGAAGTCAATACAACCTCTTTTCTAGGAAGGAGGTTGTTGGTCTGAT
CTTGAGTGGTGTGAGAAGACCATTTTGATCCAAACCGGGTGCCTAGGCTGGGTCATTTCC
AACCCGGGTCAAACAATTGATCACAGGATGTTTTTCTGGTTTATGTGCTATCTTGTGGTT
GTGTGGCTGATTTCTGCCTCAGATGCCCAGAGCTGCCCAGAACTCCCTGCAGTAGACAAT
AGCATCTTTGTTGCAAAGGAGGGGGAAGGACAAATTCTTGGGACTTATTTCTGTATTAAT
GGCTACCACCTGGTAGGAGAGAAAACCCTTTTTTGTAATTCCTCGCAGGAGTGGAATGCC
CCCGCCCCTGAGTGCCGTTTGGGCCACTGTCCTGATCCTGTGCTGGGGAATGGTGAGTTC
AGTCACTTGGAAACTGTGAATGTGAATGACACAATCACGTTTAAGTGCAATGAGCATTAC
ATCCTCAAGGGCAGCAATTGGAGCCGGTGCCGAGAGGACCACACCTGGGTGCCTCCCTTT
CCCATCTGTAAAAGCAAAGACTGTGGCCCTCCTGAGAATCCAATTCATGGCTATTTTGAA
GGAATCGATTTCAACTCAGGGTCTACCATTACTTATTACTGTAAAGCGAGGTACCGCCTG
GTGGGCACACAGCACCAACAGTGCATTGATGGGGAGTGGAGTGGTGCAATTCCAGTCTGT
GAGCTGATCCCAGAAGCTCCCAAGACAGCTTTGCAGATTGAGTTTGAGAAGGCCCTTCTT
GCCTTTCAGGAAAGTGAGGAACTGTGCAAAGCCACTGAGAACTTTATGCAAAGATTAAAG
AAAAGTGGCTTAACGATGGAGGAACTGAAATATTCTCTGGAAATAAAGAAAGCTGAACTA
AAGGCAAAAATGTTGCTCTGACATTGTAGTTTGAATAATCTGGGTCATAGAAATACTCTG
ACGAATAAAATTTCCTCTTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCTGAATTGGAGTTACAGCCGCCGGCCTACACCACAGCCACGACAACATCAGATCCA
AGCCACGTCTGCGATCTATACCACAGCTCAAGGCAACGCCTGATCCTTAACGCGCTGATG
GAGACCAGGGATCAAACCTGCATCCTCATGGATACTAGTCCTATACATTTCTGCTGAGAG
TCACGATGGGAACTCCCCTTACAGCTATTCTTATTTCCTGATGTAGATTATTTTTTTTTT
CCTTCCAGGGAAGGGAAGTCAATACAACCTCTTTTCTAGGAAGGAGGTTGTTGGTCTGAT
CTTGAGTGGTGTGAGAAGACCATTTTGATCCAAACCGGGTGCCTAGGCTGGGTCATTTCC
AACCCGGGTCAAACAATTGATCACAGGATGTTTTTCTGGTTTATGTGCTATCTTGTGGTT
GTGTGGCTGATTTCTGCCTCAGATGCCCAGAGCTGCCCAGAACTCCCTGCAGTAGACAAT
AGCATCTTTGTTGCAAAGGAGGGGGAAGGACAAATTCTTGGGACTTATTTCTGTATTAAT
GGCTACCACCTGGTAGGAGAGAAAACCCTTTTTTGTAATTCCTCGCAGGAGTGGAATGCC
CCCGCCCCTGAGTGCCGTTTGGGCCACTGTCCTGATCCTGTGCTGGGGAATGGTGAGTTC
AGTCACTTGGAAACTGTGAATGTGAATGACACAATCACGTTTAAGTGCAATGAGCATTAC
ATCCTCAAGGGCAGCAATTGGAGCCGGTGCCGAGAGGACCACACCTGGGTGCCTCCCTTT
CCCATCTGTAAAAGCAAAGACTGTGGCCCTCCTGAGAATCCAATTCATGGCTATTTTGAA
GGAATCGATTTCAACTCAGGGTCTACCATTACTTATTACTGTAAAGCGAGGTACCGCCTG
GTGGGCACACAGCACCAACAGTGCATTGATGGGGAGTGGAGTGGTGCAATTCCAGTCTGT
GAGCTGATCCCAGAAGCTCCCAAGACAGCTTTGCAGATTGAGTTTGAGAAGGCCCTTCTT
GCCTTTCAGGAAAGTGAGGAACTGTGCAAAGCCACTGAGAACTTTATGCAAAGATTAAAG
AAAAGTGGCTTAACGATGGAGGAACTGAAATATTCTCTGGAAATAAAGAAAGCTGAACTA
AAGGCAAAAATGTTGCTCTGACATTGTAGTTTGAATAATCTGGGTCATAGAAATACTCTG
ACGAATAAAATTTCCTCTTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55665027|emb|CAH70780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665027|emb|CAH70780.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-310, + strand, RNAz p=0.965213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-310, + strand, RNAz p=0.965213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001017364, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001017364, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               197-445, gnl|bosTau2|chr16 (3765600-3765349)
               

               
               197-445, gnl|Hg17|chr1 (203651076-203651329)
               


               
               620-796, gnl|bosTau2|chr16 (3762357-3762181)
               

               
               620-796, gnl|Hg17|chr1 (203653384-203653560)
               

               
               620-796, gnl|Mm7|chr1 (130587060-130586884)
               


               
               889-1013, gnl|bosTau2|chr16 (3755845-3755724)
               

               
               889-1013, gnl|Hg17|chr1 (203659888-203660000)
               

               
               889-1013, gnl|Mm7|chr1 (130575157-130575033)
               


               
               1018-1229, gnl|bosTau2|chr16 (3754751-3754541)
               

               
               1018-1229, gnl|canFam2|chr7 (9191586-9191979)
               

               
               1018-1229, gnl|echTel1|scaffold_270960 (9990-9586)
               

               
               1018-1229, gnl|hg17|chr1 (203661365-203661752)
               

               
               1018-1229, gnl|Hg17|chr1 (203661529-203661733)
               

               
               1018-1229, gnl|loxAfr1|scaffold_42707 (11348-11745)
               

               
               1018-1229, gnl|mm7|chr1 (130574620-130574272)
               

               
               1018-1229, gnl|Mm7|chr1 (130574483-130574288)
               

               
               1018-1229, gnl|monDom2|scaffold_13 (9473102-9473466)
               

               
               1018-1229, gnl|oryCun1|scaffold_210184 (352128-352530)
               

               
               1018-1229, gnl|panTro1|chr1 (187243757-187244144)
               

               
               1018-1229, gnl|rheMac2|chr1 (163256296-163255909)
               

               
               1018-1229, gnl|rn3|chr13 (43612544-43612188)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-445, gnl|bosTau2|chr16 (3765600-3765349)
               

               
               197-445, gnl|Hg17|chr1 (203651076-203651329)
               


               
               620-796, gnl|bosTau2|chr16 (3762357-3762181)
               

               
               620-796, gnl|Hg17|chr1 (203653384-203653560)
               

               
               620-796, gnl|Mm7|chr1 (130587060-130586884)
               


               
               889-1013, gnl|bosTau2|chr16 (3755845-3755724)
               

               
               889-1013, gnl|Hg17|chr1 (203659888-203660000)
               

               
               889-1013, gnl|Mm7|chr1 (130575157-130575033)
               


               
               1018-1229, gnl|bosTau2|chr16 (3754751-3754541)
               

               
               1018-1229, gnl|canFam2|chr7 (9191586-9191979)
               

               
               1018-1229, gnl|echTel1|scaffold_270960 (9990-9586)
               

               
               1018-1229, gnl|hg17|chr1 (203661365-203661752)
               

               
               1018-1229, gnl|Hg17|chr1 (203661529-203661733)
               

               
               1018-1229, gnl|loxAfr1|scaffold_42707 (11348-11745)
               

               
               1018-1229, gnl|mm7|chr1 (130574620-130574272)
               

               
               1018-1229, gnl|Mm7|chr1 (130574483-130574288)
               

               
               1018-1229, gnl|monDom2|scaffold_13 (9473102-9473466)
               

               
               1018-1229, gnl|oryCun1|scaffold_210184 (352128-352530)
               

               
               1018-1229, gnl|panTro1|chr1 (187243757-187244144)
               

               
               1018-1229, gnl|rheMac2|chr1 (163256296-163255909)
               

               
               1018-1229, gnl|rn3|chr13 (43612544-43612188)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cje (0.991408)
               

               
               lun (0.752445)
               

               
               sin (0.349895)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.991408)
               

               
               lun (0.752445)
               

               
               sin (0.349895)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               tra (0.123092)

	197-445, gnl\|bosTau2\|chr16 (3765600-3765349)
	197-445, gnl\|Hg17\|chr1 (203651076-203651329)

	620-796, gnl\|bosTau2\|chr16 (3762357-3762181)
	620-796, gnl\|Hg17\|chr1 (203653384-203653560)
	620-796, gnl\|Mm7\|chr1 (130587060-130586884)

	889-1013, gnl\|bosTau2\|chr16 (3755845-3755724)
	889-1013, gnl\|Hg17\|chr1 (203659888-203660000)
	889-1013, gnl\|Mm7\|chr1 (130575157-130575033)

	1018-1229, gnl\|bosTau2\|chr16 (3754751-3754541)
	1018-1229, gnl\|canFam2\|chr7 (9191586-9191979)
	1018-1229, gnl\|echTel1\|scaffold_270960 (9990-9586)
	1018-1229, gnl\|hg17\|chr1 (203661365-203661752)
	1018-1229, gnl\|Hg17\|chr1 (203661529-203661733)
	1018-1229, gnl\|loxAfr1\|scaffold_42707 (11348-11745)
	1018-1229, gnl\|mm7\|chr1 (130574620-130574272)
	1018-1229, gnl\|Mm7\|chr1 (130574483-130574288)
	1018-1229, gnl\|monDom2\|scaffold_13 (9473102-9473466)
	1018-1229, gnl\|oryCun1\|scaffold_210184 (352128-352530)
	1018-1229, gnl\|panTro1\|chr1 (187243757-187244144)
	1018-1229, gnl\|rheMac2\|chr1 (163256296-163255909)
	1018-1229, gnl\|rn3\|chr13 (43612544-43612188)

	cje (0.991408)
	lun (0.752445)
	sin (0.349895)
	sto (0.179824)
	ill (0.175593)
	mcp (0.170648)
	cli (0.152812)
	cst (0.140036)
	cov (0.132153)
	tra (0.123092)