Ss1.1-Pig4-TMW8036I12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTTCTCGGCCCGACGCACCTGCTTGCAGGCTGCCTGGCGCTCCTTGGTCTCGTTGTC CAGCTGCTCCTCCAGCTGCGCGATCTTGGCCTCGAGGGCGGCGATGGAGGCCTTGTACTT GGACTTGACGGTGCCTTCCATCTCCTGCAGCTTGACCTTGAGCTCCTTGTTCTGGCGCTC CAGCTGTTGCCGTGCGTTCTCGTTCTTCTGGGCGTGGCTGCGCTCCAGGTTCAGGTCGGT ATTGATCTGGTCGATCTGCAGGTTCGCCTTCTTCAGCCTGTCGTTCACCAGCTCTGTGTT GCCCTGCTCCTCCTCCAGCTCCTCCTCCAGCTGCGCAATGCGGGCCTCCAGGCGCCGTTT CTCCTCCAACGCCAGCGCCCCTTTGCCGCTGCTGTTGGCAATCTCGTCCGCCAGCTCGTC CCGCTCCTGCTGGGCCTGGCGCTTCGCACGCTCGGCGGCGGCCAGCTCCTCCTGCAGCTG GATCATCTCGGCCTCCATGCTTTTCAGCTTCTTCTCGTTCTCCTTGGCCTGTGCCAGGAT CTCCTCGCGGGAGGCACGCGTGTCCTCCAGCTCCCGCATGTAGTCCTTCATCTGAGCCTG CAGCTTCCGCAGCTGCTTGATGGCTTCGTCCCGGTTCTTGTTGGCTGAGTCGATGTGGGC CTCCAGGTCCTTCAGGTCCATCTCCAGCTTCTTCCGAGCGGCCACAGCCATCGAGCGCTG CTTCCGCTCGTCCTCCAGCTCGGCCTCCATTTCCCGCACCTGTCTGACCAGCTGCTTCTT CTTCTCCTCGCTCTGCTCGTCGCGGCCCTGCAGGTCCCGCTCGAACTGGGCCTTCATGGC CTGCAGGTTCACCTCCAGCCGCAGCTTGGCGTCCTCGGTGGCCTGCAGCTCGTCCTCCAG CTCCTCCAGCTGGGTCTTCATCTCCTCCACCTGCTGCTCCAGAGCCCGCTTGGACTTCTC CAGCTCGTGCACGCTCTTGCCGACGTCGTCCTTGGAGCTCATGAGGTCCTCCATCTCCGT GCGGAACTGCTTGTTGAGCCGCTCCAGCTCCGCCTTCTGCTCCATGGCCTCCTCCAGCGC CCGCGCCACGGACAGCGCCTTGGTCTCCTTCTCCCGGGCCTCGGCCTCCGCCCGGTCGCG CTCCTCCGCGTACTTGGCGGAGATGGTCTTCTCCTCGGCCAGGAGCTGGTCGAACTTCTT CTGCTTCTTCTCCAGGTTGGAGACGCTCTGCCGCTGGTGGTCCAGGTCCACGAGCAGGTC GTCCAGCTCCTGCTGCAGCCGCGTCTTGGTCTTCTCCAGCTTGTCGTAGGCGGCCACTTT CTCCTCGAAGCGCTGGCCCAGCCCCTCCAGGTCCTTCTGGAGCTTCCTCTTGGCCTCCTC GGCCAGCTCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTTCTCGGCCCGACGCACCTGCTTGCAGGCTGCCTGGCGCTCCTTGGTCTCGTTGTC CAGCTGCTCCTCCAGCTGCGCGATCTTGGCCTCGAGGGCGGCGATGGAGGCCTTGTACTT GGACTTGACGGTGCCTTCCATCTCCTGCAGCTTGACCTTGAGCTCCTTGTTCTGGCGCTC CAGCTGTTGCCGTGCGTTCTCGTTCTTCTGGGCGTGGCTGCGCTCCAGGTTCAGGTCGGT ATTGATCTGGTCGATCTGCAGGTTCGCCTTCTTCAGCCTGTCGTTCACCAGCTCTGTGTT GCCCTGCTCCTCCTCCAGCTCCTCCTCCAGCTGCGCAATGCGGGCCTCCAGGCGCCGTTT CTCCTCCAACGCCAGCGCCCCTTTGCCGCTGCTGTTGGCAATCTCGTCCGCCAGCTCGTC CCGCTCCTGCTGGGCCTGGCGCTTCGCACGCTCGGCGGCGGCCAGCTCCTCCTGCAGCTG GATCATCTCGGCCTCCATGCTTTTCAGCTTCTTCTCGTTCTCCTTGGCCTGTGCCAGGAT CTCCTCGCGGGAGGCACGCGTGTCCTCCAGCTCCCGCATGTAGTCCTTCATCTGAGCCTG CAGCTTCCGCAGCTGCTTGATGGCTTCGTCCCGGTTCTTGTTGGCTGAGTCGATGTGGGC CTCCAGGTCCTTCAGGTCCATCTCCAGCTTCTTCCGAGCGGCCACAGCCATCGAGCGCTG CTTCCGCTCGTCCTCCAGCTCGGCCTCCATTTCCCGCACCTGTCTGACCAGCTGCTTCTT CTTCTCCTCGCTCTGCTCGTCGCGGCCCTGCAGGTCCCGCTCGAACTGGGCCTTCATGGC CTGCAGGTTCACCTCCAGCCGCAGCTTGGCGTCCTCGGTGGCCTGCAGCTCGTCCTCCAG CTCCTCCAGCTGGGTCTTCATCTCCTCCACCTGCTGCTCCAGAGCCCGCTTGGACTTCTC CAGCTCGTGCACGCTCTTGCCGACGTCGTCCTTGGAGCTCATGAGGTCCTCCATCTCCGT GCGGAACTGCTTGTTGAGCCGCTCCAGCTCCGCCTTCTGCTCCATGGCCTCCTCCAGCGC CCGCGCCACGGACAGCGCCTTGGTCTCCTTCTCCCGGGCCTCGGCCTCCGCCCGGTCGCG CTCCTCCGCGTACTTGGCGGAGATGGTCTTCTCCTCGGCCAGGAGCTGGTCGAACTTCTT CTGCTTCTTCTCCAGGTTGGAGACGCTCTGCCGCTGGTGGTCCAGGTCCACGAGCAGGTC GTCCAGCTCCTGCTGCAGCCGCGTCTTGGTCTTCTCCAGCTTGTCGTAGGCGGCCACTTT CTCCTCGAAGCGCTGGCCCAGCCCCTCCAGGTCCTTCTGGAGCTTCCTCTTGGCCTCCTC GGCCAGCTCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 46-1304, - strand, RNAz p=0.825749 | |
| 468-586, + strand, RNAz p=0.578203 | |
| 856-972, + strand, RNAz p=0.858525 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-1304, - strand, RNAz p=0.825749 | |
| 468-586, + strand, RNAz p=0.578203 | |
| 856-972, + strand, RNAz p=0.858525 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 46-262, gnl|bosTau2|chr2 (77855945-77856161) | |
| 46-262, gnl|canFam2|chr5 (36239529-36239668) | |
| 46-262, gnl|danRer3|chr6 (3597231-3597370) | |
| 46-262, gnl|dasNov1|scaffold_58419 (3701-3562) | |
| 46-262, gnl|echTel1|scaffold_155681 (778-917) | |
| 46-262, gnl|fr1|chrUn (119941100-119940961) | |
| 46-262, gnl|galGal2|chr18 (1660334-1660473) | |
| 46-262, gnl|hg17|chr17 (8324149-8324288) | |
| 46-262, gnl|Hg17|chr17 (8324152-8324368) | |
| 46-262, gnl|loxAfr1|scaffold_1864 (24617-24478) | |
| 46-262, gnl|mm7|chr11 (68893585-68893446) | |
| 46-262, gnl|Mm7|chr11 (68893580-68893363) | |
| 46-262, gnl|monDom2|scaffold_66 (5980681-5980820) | |
| 46-262, gnl|oryCun1|scaffold_173547 (83678-83539) | |
| 46-262, gnl|panTro1|chr19_random (30125948-30125809) | |
| 46-262, gnl|rheMac2|chr16 (8227632-8227771) | |
| 46-262, gnl|rn3|chr10 (55584766-55584627) | |
| 46-262, gnl|tetNig1|chrUn_random (27309322-27309118) | |
| 46-262, gnl|xenTro1|scaffold_270 (705341-705480) | |
| 48-252, gnl|bosTau2|chr25 (16262628-16262832) | |
| 48-252, gnl|canFam2|chr6 (31177609-31177388) | |
| 48-252, gnl|danRer3|chr3 (32376928-32377142) | |
| 48-252, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 48-252, gnl|echTel1|scaffold_155681 (774-995) | |
| 48-252, gnl|fr1|chrUn (285975625-285975408) | |
| 48-252, gnl|galGal2|chr14 (9607792-9608017) | |
| 48-252, gnl|hg17|chr16 (15718490-15718711) | |
| 48-252, gnl|Hg17|chr16 (15718499-15718703) | |
| 48-252, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 48-252, gnl|mm7|chr16 (13748563-13748784) | |
| 48-252, gnl|Mm7|chr16 (13748572-13748776) | |
| 48-252, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 48-252, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 48-252, gnl|panTro1|chr18 (16089391-16089612) | |
| 48-252, gnl|rheMac2|chr20 (15435112-15435333) | |
| 48-252, gnl|rn3|chr10 (769604-769383) | |
| 48-252, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 48-252, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 468-602, gnl|bosTau2|chr25 (16264170-16264304) | |
| 468-602, gnl|canFam2|chr6 (31175795-31175628) | |
| 468-602, gnl|danRer3|chr3 (32377588-32377747) | |
| 468-602, gnl|dasNov1|scaffold_3919 (39117-39283) | |
| 468-602, gnl|echTel1|scaffold_294344 (6031-5880) | |
| 468-602, gnl|fr1|chrUn (285974966-285974822) | |
| 468-602, gnl|galGal2|chr14 (9609016-9609151) | |
| 468-602, gnl|hg17|chr16 (15720939-15721106) | |
| 468-602, gnl|Hg17|chr16 (15720942-15721076) | |
| 468-602, gnl|loxAfr1|scaffold_13931 (217-350) | |
| 468-602, gnl|mm7|chr16 (13751135-13751285) | |
| 468-602, gnl|Mm7|chr16 (13751138-13751272) | |
| 468-602, gnl|monDom2|scaffold_17 (27557414-27557262) | |
| 468-602, gnl|oryCun1|scaffold_200334 (140033-139866) | |
| 468-602, gnl|panTro1|chr18 (16091840-16092007) | |
| 468-602, gnl|rheMac2|chr20 (15437578-15437745) | |
| 468-602, gnl|rn3|chr10 (767290-767127) | |
| 468-602, gnl|tetNig1|chrUn_random (27308607-27308460) | |
| 468-602, gnl|xenTro1|scaffold_214 (13574-13742) | |
| 737-972, gnl|bosTau2|chr18 (49163439-49163203) | |
| 737-972, gnl|canFam2|chr1 (109276702-109276473) | |
| 737-972, gnl|danRer3|chr6 (3604742-3604517) | |
| 737-972, gnl|dasNov1|scaffold_71690 (1770-1551) | |
| 737-972, gnl|echTel1|scaffold_89169 (4536-4312) | |
| 737-972, gnl|fr1|chrUn (147049061-147049278) | |
| 737-972, gnl|galGal2|chr1 (48532869-48533086) | |
| 737-972, gnl|hg17|chr19 (55484502-55484729) | |
| 737-972, gnl|Hg17|chr19 (55484849-55484505) | |
| 737-972, gnl|loxAfr1|scaffold_7170 (105953-106180) | |
| 737-972, gnl|mm7|chr7 (40790839-40790615) | |
| 737-972, gnl|Mm7|chr7 (40790603-40790834) | |
| 737-972, gnl|monDom2|scaffold_34 (2067924-2068142) | |
| 737-972, gnl|oryCun1|scaffold_200353 (21265-21483) | |
| 737-972, gnl|panTro1|chr20 (52789313-52789540) | |
| 737-972, gnl|rheMac2|chr19 (56486063-56486290) | |
| 737-972, gnl|rn3|chr1 (95170389-95170162) | |
| 737-972, gnl|tetNig1|chrUn_random (27307904-27308122) | |
| 737-972, gnl|xenTro1|scaffold_374 (809068-808850) | |
| 1186-1391, gnl|bosTau2|chr25 (16268231-16268436) | |
| 1186-1391, gnl|Hg17|chr16 (15725519-15725724) | |
| 1186-1391, gnl|Mm7|chr16 (13754048-13754253) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-262, gnl|bosTau2|chr2 (77855945-77856161) | |
| 46-262, gnl|canFam2|chr5 (36239529-36239668) | |
| 46-262, gnl|danRer3|chr6 (3597231-3597370) | |
| 46-262, gnl|dasNov1|scaffold_58419 (3701-3562) | |
| 46-262, gnl|echTel1|scaffold_155681 (778-917) | |
| 46-262, gnl|fr1|chrUn (119941100-119940961) | |
| 46-262, gnl|galGal2|chr18 (1660334-1660473) | |
| 46-262, gnl|hg17|chr17 (8324149-8324288) | |
| 46-262, gnl|Hg17|chr17 (8324152-8324368) | |
| 46-262, gnl|loxAfr1|scaffold_1864 (24617-24478) | |
| 46-262, gnl|mm7|chr11 (68893585-68893446) | |
| 46-262, gnl|Mm7|chr11 (68893580-68893363) | |
| 46-262, gnl|monDom2|scaffold_66 (5980681-5980820) | |
| 46-262, gnl|oryCun1|scaffold_173547 (83678-83539) | |
| 46-262, gnl|panTro1|chr19_random (30125948-30125809) | |
| 46-262, gnl|rheMac2|chr16 (8227632-8227771) | |
| 46-262, gnl|rn3|chr10 (55584766-55584627) | |
| 46-262, gnl|tetNig1|chrUn_random (27309322-27309118) | |
| 46-262, gnl|xenTro1|scaffold_270 (705341-705480) | |
| 48-252, gnl|bosTau2|chr25 (16262628-16262832) | |
| 48-252, gnl|canFam2|chr6 (31177609-31177388) | |
| 48-252, gnl|danRer3|chr3 (32376928-32377142) | |
| 48-252, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 48-252, gnl|echTel1|scaffold_155681 (774-995) | |
| 48-252, gnl|fr1|chrUn (285975625-285975408) | |
| 48-252, gnl|galGal2|chr14 (9607792-9608017) | |
| 48-252, gnl|hg17|chr16 (15718490-15718711) | |
| 48-252, gnl|Hg17|chr16 (15718499-15718703) | |
| 48-252, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 48-252, gnl|mm7|chr16 (13748563-13748784) | |
| 48-252, gnl|Mm7|chr16 (13748572-13748776) | |
| 48-252, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 48-252, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 48-252, gnl|panTro1|chr18 (16089391-16089612) | |
| 48-252, gnl|rheMac2|chr20 (15435112-15435333) | |
| 48-252, gnl|rn3|chr10 (769604-769383) | |
| 48-252, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 48-252, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 468-602, gnl|bosTau2|chr25 (16264170-16264304) | |
| 468-602, gnl|canFam2|chr6 (31175795-31175628) | |
| 468-602, gnl|danRer3|chr3 (32377588-32377747) | |
| 468-602, gnl|dasNov1|scaffold_3919 (39117-39283) | |
| 468-602, gnl|echTel1|scaffold_294344 (6031-5880) | |
| 468-602, gnl|fr1|chrUn (285974966-285974822) | |
| 468-602, gnl|galGal2|chr14 (9609016-9609151) | |
| 468-602, gnl|hg17|chr16 (15720939-15721106) | |
| 468-602, gnl|Hg17|chr16 (15720942-15721076) | |
| 468-602, gnl|loxAfr1|scaffold_13931 (217-350) | |
| 468-602, gnl|mm7|chr16 (13751135-13751285) | |
| 468-602, gnl|Mm7|chr16 (13751138-13751272) | |
| 468-602, gnl|monDom2|scaffold_17 (27557414-27557262) | |
| 468-602, gnl|oryCun1|scaffold_200334 (140033-139866) | |
| 468-602, gnl|panTro1|chr18 (16091840-16092007) | |
| 468-602, gnl|rheMac2|chr20 (15437578-15437745) | |
| 468-602, gnl|rn3|chr10 (767290-767127) | |
| 468-602, gnl|tetNig1|chrUn_random (27308607-27308460) | |
| 468-602, gnl|xenTro1|scaffold_214 (13574-13742) | |
| 737-972, gnl|bosTau2|chr18 (49163439-49163203) | |
| 737-972, gnl|canFam2|chr1 (109276702-109276473) | |
| 737-972, gnl|danRer3|chr6 (3604742-3604517) | |
| 737-972, gnl|dasNov1|scaffold_71690 (1770-1551) | |
| 737-972, gnl|echTel1|scaffold_89169 (4536-4312) | |
| 737-972, gnl|fr1|chrUn (147049061-147049278) | |
| 737-972, gnl|galGal2|chr1 (48532869-48533086) | |
| 737-972, gnl|hg17|chr19 (55484502-55484729) | |
| 737-972, gnl|Hg17|chr19 (55484849-55484505) | |
| 737-972, gnl|loxAfr1|scaffold_7170 (105953-106180) | |
| 737-972, gnl|mm7|chr7 (40790839-40790615) | |
| 737-972, gnl|Mm7|chr7 (40790603-40790834) | |
| 737-972, gnl|monDom2|scaffold_34 (2067924-2068142) | |
| 737-972, gnl|oryCun1|scaffold_200353 (21265-21483) | |
| 737-972, gnl|panTro1|chr20 (52789313-52789540) | |
| 737-972, gnl|rheMac2|chr19 (56486063-56486290) | |
| 737-972, gnl|rn3|chr1 (95170389-95170162) | |
| 737-972, gnl|tetNig1|chrUn_random (27307904-27308122) | |
| 737-972, gnl|xenTro1|scaffold_374 (809068-808850) | |
| 1186-1391, gnl|bosTau2|chr25 (16268231-16268436) | |
| 1186-1391, gnl|Hg17|chr16 (15725519-15725724) | |
| 1186-1391, gnl|Mm7|chr16 (13754048-13754253) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |