Non-Coding RNA Search

Ss1.1-Pig4-TMW8036I13.3.5

Sequence:


               
               GTCAGGCTGGGAGGGAGTTGTCCCTGCCTGACTCTCGAGAGAGGAGCCGCCACTGTGACA
ATCCACAGGCACGAAACTGCTGCAAGGGAACATCCTTTTTCTTCTTCTGACCAGTCTTGG
TAGAAGCAGTATTATCACAGACCAAAGTACAAACACTACTGCATCATCATTATCAGCTTC
TACAACAAATACAGCTATAGATGTATCATCATCTATAACTTCTGCAACAAATACACCTGT
ATCAACACCAAACCCAACATCATTACCAGATGCCGTTGGGAAATCAACAACTGGAACATT
TCCTAAAGGAACTCCAGTCGAAGGTACCACGAAGACTGCGTCCTTCACTATAAATGCAAC
AGTGACAAGTATTTCACTTTCAGATGCTGTTTTAACATTGCAAAGTTCCCCATTCCAGAC
TGAGATTCAGAGTTCAATCACAGCAACAGAAACACCAGTTACCACTCCACTACCAGAATC
ATCACCTTCCGAAACCAGTACATTATCCTCAATATCAGCAATAACAACTTCAGAAAACAC
CTTACATTTTCAAGGCATTGAGAATGGAAGAAATGCAAGCTCTTCAACCAGCCCCTCTTA
TTCTAGTATTATTTTGCCTGTGGTTATTGCTTTGATTGTGATAACACTTTCAGTCTTTGT
TCTGGTGGGTTTGTATCGAATGTGCTGGAAGAAAGACCCAGGCACGCCGGAAAATGGAAA
TGACCAACCTCAGTCCGATAAAGAGAGTGTGAAGCTTCTCACAGTTAAGACAATTTCTCA
TGAGTCTGGTGAGCACTCTGCACAAGGGAAAACTAAGAACTGACAGCTTGATGAATCCTC
TCCACACCTGGGCAATAAATATGCTTAATCTTCAGCTTCTATGCTCCACGAGTAGCAAGG
GAGAAAGCCTTGTGGAATCAATCCTGACTTCCAATCCTGCTTGCCTGTCTGCACCAGCCA
GTCACCTGGTCCCAATAGAGGATTTCCAGATGACATGTAATCATCTGATAGAGTTAAAGA
TAATCCTGGGCCTCTCCTGTCCTTTGAGACGGAAAAAGCACATTACCACATTTATAGGAA
CATTCCTAGGAGAGTGAATTTTAAGCGGGGTGTCTGCGAGCAGTCGACAGACCAGGTTGA
CCAGACCAGGCAGGTGGCTCCACTGATGAAATGATTGTCCCGTGAGTTTAAAGTTTCCAG
AACCAACAGATTTCACCCACAGAGACATTCCTACTTTCTGGGTGTTCTTCTATTACCTAA
TGTTTGTATTTATTGTTTTCCACTATGTTAATGCAGGGAAAATTTGCAAGTGTATTATTA
AATACTGGGTCGAAATCCTGCCAGGCCACTTTGTACATAAAGATATTTTATTCATACTTT
TATGTGTTACTTTTAATAAATAATTACTGTACTCAACACACTAAAAATATCATAATGTGA
CTATGAAAATGGCAGGTGTATTGTCTTCCCATAATTGTGAATATTTTTGGATTGATTATT
AGAATATGAGAACTCAGTAATGAAGGACATCTAAGAAAGAGACAAAAGATGCAAGTATAG
ACCCTGTTCAAGAGAAGTCAACTTACCCTTTCTCTGGTCTTCCTATTTGTAATTCACAGT
GTATAACAAGGATATAAGGGCATTTATGACAGTCTGAACAGGACTGAGATGTTTTTCGTA
CTCCATTTGATTGATACTATCTCTGTGCATTTTTTATTTCTTTTAGAAATATACTGATTT
GTTCTAGCAATCATTGTTAAATCTTCAGATTGTAGAAACCAACATTTCATAAATACATAG
TTCTGATATTATTTTTCAGAGTATCACTTTCCTAAAAACACCATCTGATTATAGCTGCCA
CTCCATCAGGGACAAATTCTTCTGTTGAAAGCTGATTGATCAACCTTGACCACTCCTTGG
ACACATGGGATCAAAATGTCATGTTGGTTCAAGTTCTGTGGAAAGCTTTGGCACTAACAA
GCTGCCAGGGGAAGCTCTTTAATTTTTATGATTACTAAGCTGATTTTGATGCTGAATTAC
CTTAGTGATATGAAGGCAGTGCAGTGGAGACAGAAGGGTATAGTTAAAACTACCTTCAGT
TTATTTTGTTGCAATGTATTTTAAAATGGTCAGCATTAAGGACTATGTAAATAATCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGGCTGGGAGGGAGTTGTCCCTGCCTGACTCTCGAGAGAGGAGCCGCCACTGTGACA
ATCCACAGGCACGAAACTGCTGCAAGGGAACATCCTTTTTCTTCTTCTGACCAGTCTTGG
TAGAAGCAGTATTATCACAGACCAAAGTACAAACACTACTGCATCATCATTATCAGCTTC
TACAACAAATACAGCTATAGATGTATCATCATCTATAACTTCTGCAACAAATACACCTGT
ATCAACACCAAACCCAACATCATTACCAGATGCCGTTGGGAAATCAACAACTGGAACATT
TCCTAAAGGAACTCCAGTCGAAGGTACCACGAAGACTGCGTCCTTCACTATAAATGCAAC
AGTGACAAGTATTTCACTTTCAGATGCTGTTTTAACATTGCAAAGTTCCCCATTCCAGAC
TGAGATTCAGAGTTCAATCACAGCAACAGAAACACCAGTTACCACTCCACTACCAGAATC
ATCACCTTCCGAAACCAGTACATTATCCTCAATATCAGCAATAACAACTTCAGAAAACAC
CTTACATTTTCAAGGCATTGAGAATGGAAGAAATGCAAGCTCTTCAACCAGCCCCTCTTA
TTCTAGTATTATTTTGCCTGTGGTTATTGCTTTGATTGTGATAACACTTTCAGTCTTTGT
TCTGGTGGGTTTGTATCGAATGTGCTGGAAGAAAGACCCAGGCACGCCGGAAAATGGAAA
TGACCAACCTCAGTCCGATAAAGAGAGTGTGAAGCTTCTCACAGTTAAGACAATTTCTCA
TGAGTCTGGTGAGCACTCTGCACAAGGGAAAACTAAGAACTGACAGCTTGATGAATCCTC
TCCACACCTGGGCAATAAATATGCTTAATCTTCAGCTTCTATGCTCCACGAGTAGCAAGG
GAGAAAGCCTTGTGGAATCAATCCTGACTTCCAATCCTGCTTGCCTGTCTGCACCAGCCA
GTCACCTGGTCCCAATAGAGGATTTCCAGATGACATGTAATCATCTGATAGAGTTAAAGA
TAATCCTGGGCCTCTCCTGTCCTTTGAGACGGAAAAAGCACATTACCACATTTATAGGAA
CATTCCTAGGAGAGTGAATTTTAAGCGGGGTGTCTGCGAGCAGTCGACAGACCAGGTTGA
CCAGACCAGGCAGGTGGCTCCACTGATGAAATGATTGTCCCGTGAGTTTAAAGTTTCCAG
AACCAACAGATTTCACCCACAGAGACATTCCTACTTTCTGGGTGTTCTTCTATTACCTAA
TGTTTGTATTTATTGTTTTCCACTATGTTAATGCAGGGAAAATTTGCAAGTGTATTATTA
AATACTGGGTCGAAATCCTGCCAGGCCACTTTGTACATAAAGATATTTTATTCATACTTT
TATGTGTTACTTTTAATAAATAATTACTGTACTCAACACACTAAAAATATCATAATGTGA
CTATGAAAATGGCAGGTGTATTGTCTTCCCATAATTGTGAATATTTTTGGATTGATTATT
AGAATATGAGAACTCAGTAATGAAGGACATCTAAGAAAGAGACAAAAGATGCAAGTATAG
ACCCTGTTCAAGAGAAGTCAACTTACCCTTTCTCTGGTCTTCCTATTTGTAATTCACAGT
GTATAACAAGGATATAAGGGCATTTATGACAGTCTGAACAGGACTGAGATGTTTTTCGTA
CTCCATTTGATTGATACTATCTCTGTGCATTTTTTATTTCTTTTAGAAATATACTGATTT
GTTCTAGCAATCATTGTTAAATCTTCAGATTGTAGAAACCAACATTTCATAAATACATAG
TTCTGATATTATTTTTCAGAGTATCACTTTCCTAAAAACACCATCTGATTATAGCTGCCA
CTCCATCAGGGACAAATTCTTCTGTTGAAAGCTGATTGATCAACCTTGACCACTCCTTGG
ACACATGGGATCAAAATGTCATGTTGGTTCAAGTTCTGTGGAAAGCTTTGGCACTAACAA
GCTGCCAGGGGAAGCTCTTTAATTTTTATGATTACTAAGCTGATTTTGATGCTGAATTAC
CTTAGTGATATGAAGGCAGTGCAGTGGAGACAGAAGGGTATAGTTAAAACTACCTTCAGT
TTATTTTGTTGCAATGTATTTTAAAATGGTCAGCATTAAGGACTATGTAAATAATCATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               858-2026, gnl|bosTau2|chr6 (8925531-8926702)
               

               
               858-2026, gnl|Hg17|chr4 (101676713-101675532)
               

               
               858-2026, gnl|Mm7|chr3 (137226565-137227642)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               858-2026, gnl|bosTau2|chr6 (8925531-8926702)
               

               
               858-2026, gnl|Hg17|chr4 (101676713-101675532)
               

               
               858-2026, gnl|Mm7|chr3 (137226565-137227642)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               sug (0.636456)
               

               
               clu (0.478583)
               

               
               cty (0.41632)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.636456)
               

               
               clu (0.478583)
               

               
               cty (0.41632)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	858-2026, gnl\|bosTau2\|chr6 (8925531-8926702)
	858-2026, gnl\|Hg17\|chr4 (101676713-101675532)
	858-2026, gnl\|Mm7\|chr3 (137226565-137227642)

	sug (0.636456)
	clu (0.478583)
	cty (0.41632)
	tra (0.369276)
	mgm (0.360685)
	sto (0.359648)
	cte (0.29274)
	csk (0.281492)
	lyg (0.266205)
	spc (0.226732)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	hyp (0.142837)
	ret (0.128733)
	jca (0.11396)
	ldo (0.0970026)