Non-Coding RNA Search

Ss1.1-Pig4-TMW8036I18.5

Sequence:


               
               ACCGTGGATAAGCACAGCGACGAGTACAAGATCCGGCGTGAGCGCAACAACATCGCGGTG
CGCAAGAGCCGCGACAAGGCCAAGATGCGCAACCTGGAGACGCAGCATAAGGTCCTGGAG
CTCACGGCCGAGAACGAGCGGCTCCAGAAGAAGGTGGAGCAGCTGTCGCGCGAGCTCAGC
ACCCTGCGGAACTTGTTCAAGCAGCTGCCCGAGCCCCTGCTCGCCTCCTCCGGCCACTGC
TAGCGCGGCCCCCGCGCGCGTCCCCCTGCCGGCCCGCCGGCCTCCGCGCTGCCGGGCGCG
CCGCGGCCACAGTGACTCCGGGAAGCGCCCGCGCTCCCGCCCCCGCCCCCAGTGGCGCCG
GCAAAACTTTGGCACTGGGGCACTTGGCAGCGCGGGGAGCTCGTCGGTAATTTTAATATT
TTATTATATATATCTATATTTTTGTCCAAACCAACCGCACATGCAGATGAGGCGCCCGCC
CGTGGTGTTATTTAAAGAAGAAATGTCTATGTGTACAGATGAATGATAAACTCTGCCTCT
CCTCCTGCCCCCTCTCCAGGCGCCGGCGGGCGGGCCGGTTTCGAAGTTGATGCAATCGGT
TTAAACATGGCTGAACGCGTGTGTACACGGGACTGACGCAACCCACGTGTAACTGTCAGC
CGGGCCCTGAGTAATCGCTTAAAGATGTTCCTACGGGGTTGTTTCTGTTGCTGTTGTTTT
TGTTTTTGTTGTTGTTTTTTTGGTCTTTTTTTGTATTATAAAAAATAATCTATTTCTATG
AGAAAAGAGGCATCTGTATATTTGGGAATCTTTTCCGTTCGAGCATTAAGAACACTTTTA
ATAAACTTTTTTTTTTTTGAGAATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGTGGATAAGCACAGCGACGAGTACAAGATCCGGCGTGAGCGCAACAACATCGCGGTG
CGCAAGAGCCGCGACAAGGCCAAGATGCGCAACCTGGAGACGCAGCATAAGGTCCTGGAG
CTCACGGCCGAGAACGAGCGGCTCCAGAAGAAGGTGGAGCAGCTGTCGCGCGAGCTCAGC
ACCCTGCGGAACTTGTTCAAGCAGCTGCCCGAGCCCCTGCTCGCCTCCTCCGGCCACTGC
TAGCGCGGCCCCCGCGCGCGTCCCCCTGCCGGCCCGCCGGCCTCCGCGCTGCCGGGCGCG
CCGCGGCCACAGTGACTCCGGGAAGCGCCCGCGCTCCCGCCCCCGCCCCCAGTGGCGCCG
GCAAAACTTTGGCACTGGGGCACTTGGCAGCGCGGGGAGCTCGTCGGTAATTTTAATATT
TTATTATATATATCTATATTTTTGTCCAAACCAACCGCACATGCAGATGAGGCGCCCGCC
CGTGGTGTTATTTAAAGAAGAAATGTCTATGTGTACAGATGAATGATAAACTCTGCCTCT
CCTCCTGCCCCCTCTCCAGGCGCCGGCGGGCGGGCCGGTTTCGAAGTTGATGCAATCGGT
TTAAACATGGCTGAACGCGTGTGTACACGGGACTGACGCAACCCACGTGTAACTGTCAGC
CGGGCCCTGAGTAATCGCTTAAAGATGTTCCTACGGGGTTGTTTCTGTTGCTGTTGTTTT
TGTTTTTGTTGTTGTTTTTTTGGTCTTTTTTTGTATTATAAAAAATAATCTATTTCTATG
AGAAAAGAGGCATCTGTATATTTGGGAATCTTTTCCGTTCGAGCATTAAGAACACTTTTA
ATAAACTTTTTTTTTTTTGAGAATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34452021|gb|AAQ72476.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34452021|gb|AAQ72476.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-236, - strand, RNAz p=0.780434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-236, - strand, RNAz p=0.780434

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-281, gnl|bosTau2|chr18 (36587834-36587547)
               

               
               2-281, gnl|Hg17|chr19 (38484331-38484045)
               

               
               2-281, gnl|Mm7|chr7 (32009965-32010252)
               


               
               4-216, gnl|bosTau2|chr10 (13947134-13947346)
               

               
               4-216, gnl|Hg17|chr14 (22656784-22656572)
               

               
               4-216, gnl|Mm7|chr14 (49577721-49577509)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-281, gnl|bosTau2|chr18 (36587834-36587547)
               

               
               2-281, gnl|Hg17|chr19 (38484331-38484045)
               

               
               2-281, gnl|Mm7|chr7 (32009965-32010252)
               


               
               4-216, gnl|bosTau2|chr10 (13947134-13947346)
               

               
               4-216, gnl|Hg17|chr14 (22656784-22656572)
               

               
               4-216, gnl|Mm7|chr14 (49577721-49577509)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cga (0.558191)
               

               
               che (0.545256)
               

               
               cut (0.509771)
               

               
               csk (0.422238)
               

               
               cmu (0.372787)
               

               
               bfe (0.299715)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               che (0.545256)
               

               
               cut (0.509771)
               

               
               csk (0.422238)
               

               
               cmu (0.372787)
               

               
               bfe (0.299715)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	2-281, gnl\|bosTau2\|chr18 (36587834-36587547)
	2-281, gnl\|Hg17\|chr19 (38484331-38484045)
	2-281, gnl\|Mm7\|chr7 (32009965-32010252)

	4-216, gnl\|bosTau2\|chr10 (13947134-13947346)
	4-216, gnl\|Hg17\|chr14 (22656784-22656572)
	4-216, gnl\|Mm7\|chr14 (49577721-49577509)

	cga (0.558191)
	che (0.545256)
	cut (0.509771)
	csk (0.422238)
	cmu (0.372787)
	bfe (0.299715)
	pty (0.285429)
	cst (0.280073)
	pla (0.267344)
	nms (0.213858)
	aor (0.195274)
	fbs (0.175346)
	cki (0.165235)
	csp (0.161186)
	fat (0.147427)
	liv (0.146284)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	med (0.116252)
	cbl (0.114797)