Non-Coding RNA Search

Ss1.1-Pig4-TMW8036I22.5

Sequence:


               
               AACTGTGTTAATAAGTTCTGGACATTTCAAGAGTTGGCAGGTCATGGTGTTCCTCTGCCA
GATACTTTCTCTTATGGGGGTCATGAAAATTTTGCTAAAATGATTGATGAAGCAGAAGTA
CTGGAGTTCCCAATGGTTGTGAAGAATACACGAGGTCATAGAGGCAAAGCTGTGTTCTTG
GCTCGTGATAAGCATCATTTGGCTGACCTAAGCCATCTTATTCGCCATGAAGCTCCGTAC
CTATTCCAGAAGTACATTAAAGAGTCTCATGGAAGGGATGTACGTGTCATTGTCGTGGGA
GGCCGTGTGGTTGGCACCATGTTACGTTGTTCAACAGATGGGAGGATGCAAAGCAACTGC
TCACTAGGTGGTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTGGCTATC
CAGGTGTCTAACATCCTGGGAATGGATGTATGTGGCATTGACCTGTTGATGAAAGACGAC
GGCTCCTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGTTTCATCGCCTTTGATAAGGCT
TGTAATCTAGATGTAGCTGGTATCATAGCGGACTATGCCGCCTCCCTTCTGCCCTCTGGC
CGGCTCACCCGGCGTATGTCCCTGCTCTCCGTGGTGTCCACGGCCAGTGAGACTAGTGAG
CCGGAGCTGGGTCCCCCAGCCAGCACTGCTGTCGACAACATGAGCGCAAGTTCCAGCTCT
GTCGACAGTGACCCTGAAACCACGGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGCCTA
TTCAACATGAACCAACTGCTAGCCAATGAAATCAAACTCCTGGTGGAGTGATTCCACCAG
TAAATAATTAACCAACAAAAACCCTTGTAAAACTTTCTTTTTCTTCCTTTTTTTATTCTT
TTTTCTTTTTTCTTTTTTTAACCAACTTGCAATGCTGTTCATGGAAGATGCTCAGGAAGA
TGAGAAAAAATTGAGTAGGACTAGTTAAAGAAGGGGGAGATAGACAAGACCGCTATTAAG
GTGATACTGACCTTAATTTACAAATCCTACAGAGAGAGAGGCAGAAGAGGTGAGATAGAA
AAAAATTTCAGGCTTTCATAGTTACCCTTTTAAATTACTCAATGTGTAGGTTCTCAGGCC
ATGAAGAACTTTTTTTCATGGTCCCTTGCTTTGTTTTTGTACAATTGGTAGCATAACTTC
ACATTGTGTTATAATGGGTGAGGAAAACATTACCTAAATTACAGTTTTTTATACAAATCT
AGAAATTCTGTCTATACTCTATTAACTCGCAGATTTATTTCATAGTTTATGAAATCTTGA
GGGACGCTTACTGATTTTTTTTTTTTTCCCTTGATTTGGATGGGAGGGCAATGTGAATGT
GACCCAATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGTGTTAATAAGTTCTGGACATTTCAAGAGTTGGCAGGTCATGGTGTTCCTCTGCCA
GATACTTTCTCTTATGGGGGTCATGAAAATTTTGCTAAAATGATTGATGAAGCAGAAGTA
CTGGAGTTCCCAATGGTTGTGAAGAATACACGAGGTCATAGAGGCAAAGCTGTGTTCTTG
GCTCGTGATAAGCATCATTTGGCTGACCTAAGCCATCTTATTCGCCATGAAGCTCCGTAC
CTATTCCAGAAGTACATTAAAGAGTCTCATGGAAGGGATGTACGTGTCATTGTCGTGGGA
GGCCGTGTGGTTGGCACCATGTTACGTTGTTCAACAGATGGGAGGATGCAAAGCAACTGC
TCACTAGGTGGTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTGGCTATC
CAGGTGTCTAACATCCTGGGAATGGATGTATGTGGCATTGACCTGTTGATGAAAGACGAC
GGCTCCTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGTTTCATCGCCTTTGATAAGGCT
TGTAATCTAGATGTAGCTGGTATCATAGCGGACTATGCCGCCTCCCTTCTGCCCTCTGGC
CGGCTCACCCGGCGTATGTCCCTGCTCTCCGTGGTGTCCACGGCCAGTGAGACTAGTGAG
CCGGAGCTGGGTCCCCCAGCCAGCACTGCTGTCGACAACATGAGCGCAAGTTCCAGCTCT
GTCGACAGTGACCCTGAAACCACGGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGCCTA
TTCAACATGAACCAACTGCTAGCCAATGAAATCAAACTCCTGGTGGAGTGATTCCACCAG
TAAATAATTAACCAACAAAAACCCTTGTAAAACTTTCTTTTTCTTCCTTTTTTTATTCTT
TTTTCTTTTTTCTTTTTTTAACCAACTTGCAATGCTGTTCATGGAAGATGCTCAGGAAGA
TGAGAAAAAATTGAGTAGGACTAGTTAAAGAAGGGGGAGATAGACAAGACCGCTATTAAG
GTGATACTGACCTTAATTTACAAATCCTACAGAGAGAGAGGCAGAAGAGGTGAGATAGAA
AAAAATTTCAGGCTTTCATAGTTACCCTTTTAAATTACTCAATGTGTAGGTTCTCAGGCC
ATGAAGAACTTTTTTTCATGGTCCCTTGCTTTGTTTTTGTACAATTGGTAGCATAACTTC
ACATTGTGTTATAATGGGTGAGGAAAACATTACCTAAATTACAGTTTTTTATACAAATCT
AGAAATTCTGTCTATACTCTATTAACTCGCAGATTTATTTCATAGTTTATGAAATCTTGA
GGGACGCTTACTGATTTTTTTTTTTTTCCCTTGATTTGGATGGGAGGGCAATGTGAATGT
GACCCAATAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WTW6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WTW6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               548-665, + strand, RNAz p=0.773136
               

               
               565-665, - strand, RNAz p=0.968639

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               548-665, + strand, RNAz p=0.773136
               

               
               565-665, - strand, RNAz p=0.968639

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               366-665, gnl|bosTau2|chr11 (42472157-42472453)
               

               
               366-665, gnl|canFam2|chr15 (3856852-3856432)
               

               
               366-665, gnl|danRer3|chr8 (21980424-21980890)
               

               
               366-665, gnl|dasNov1|scaffold_23815 (10387-9975)
               

               
               366-665, gnl|echTel1|scaffold_324621 (51142-50722)
               

               
               366-665, gnl|fr1|chrUn (29342599-29343032)
               

               
               366-665, gnl|galGal2|chr1 (68444816-68444405)
               

               
               366-665, gnl|hg17|chr1 (42549247-42549667)
               

               
               366-665, gnl|Hg17|chr1 (42549246-42549542)
               

               
               366-665, gnl|loxAfr1|scaffold_60896 (4063-4483)
               

               
               366-665, gnl|mm7|chr4 (118844967-118844547)
               

               
               366-665, gnl|Mm7|chr4 (118844966-118844670)
               

               
               366-665, gnl|monDom2|scaffold_43 (4260486-4260066)
               

               
               366-665, gnl|oryCun1|scaffold_127977 (12332-11912)
               

               
               366-665, gnl|panTro1|chr1 (43519243-43519663)
               

               
               366-665, gnl|rheMac2|chr1 (45309435-45309855)
               

               
               366-665, gnl|rn3|chr5 (140067732-140067312)
               

               
               366-665, gnl|tetNig1|chr9 (1790498-1790940)
               

               
               366-665, gnl|xenTro1|scaffold_225 (985393-984977)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-665, gnl|bosTau2|chr11 (42472157-42472453)
               

               
               366-665, gnl|canFam2|chr15 (3856852-3856432)
               

               
               366-665, gnl|danRer3|chr8 (21980424-21980890)
               

               
               366-665, gnl|dasNov1|scaffold_23815 (10387-9975)
               

               
               366-665, gnl|echTel1|scaffold_324621 (51142-50722)
               

               
               366-665, gnl|fr1|chrUn (29342599-29343032)
               

               
               366-665, gnl|galGal2|chr1 (68444816-68444405)
               

               
               366-665, gnl|hg17|chr1 (42549247-42549667)
               

               
               366-665, gnl|Hg17|chr1 (42549246-42549542)
               

               
               366-665, gnl|loxAfr1|scaffold_60896 (4063-4483)
               

               
               366-665, gnl|mm7|chr4 (118844967-118844547)
               

               
               366-665, gnl|Mm7|chr4 (118844966-118844670)
               

               
               366-665, gnl|monDom2|scaffold_43 (4260486-4260066)
               

               
               366-665, gnl|oryCun1|scaffold_127977 (12332-11912)
               

               
               366-665, gnl|panTro1|chr1 (43519243-43519663)
               

               
               366-665, gnl|rheMac2|chr1 (45309435-45309855)
               

               
               366-665, gnl|rn3|chr5 (140067732-140067312)
               

               
               366-665, gnl|tetNig1|chr9 (1790498-1790940)
               

               
               366-665, gnl|xenTro1|scaffold_225 (985393-984977)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	548-665, + strand, RNAz p=0.773136
	565-665, - strand, RNAz p=0.968639

	366-665, gnl\|bosTau2\|chr11 (42472157-42472453)
	366-665, gnl\|canFam2\|chr15 (3856852-3856432)
	366-665, gnl\|danRer3\|chr8 (21980424-21980890)
	366-665, gnl\|dasNov1\|scaffold_23815 (10387-9975)
	366-665, gnl\|echTel1\|scaffold_324621 (51142-50722)
	366-665, gnl\|fr1\|chrUn (29342599-29343032)
	366-665, gnl\|galGal2\|chr1 (68444816-68444405)
	366-665, gnl\|hg17\|chr1 (42549247-42549667)
	366-665, gnl\|Hg17\|chr1 (42549246-42549542)
	366-665, gnl\|loxAfr1\|scaffold_60896 (4063-4483)
	366-665, gnl\|mm7\|chr4 (118844967-118844547)
	366-665, gnl\|Mm7\|chr4 (118844966-118844670)
	366-665, gnl\|monDom2\|scaffold_43 (4260486-4260066)
	366-665, gnl\|oryCun1\|scaffold_127977 (12332-11912)
	366-665, gnl\|panTro1\|chr1 (43519243-43519663)
	366-665, gnl\|rheMac2\|chr1 (45309435-45309855)
	366-665, gnl\|rn3\|chr5 (140067732-140067312)
	366-665, gnl\|tetNig1\|chr9 (1790498-1790940)
	366-665, gnl\|xenTro1\|scaffold_225 (985393-984977)

	tes (0.207814)
	eye (0.170503)
	fat (0.147427)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)