Non-Coding RNA Search

Ss1.1-Pig4-TMW8036I23.3

Sequence:


               
               CCTTTAGTAGTGGCTCCAACTTCACTCGACATCAGAGAATTCACACTGGTGAGAAGCCCT
ATGAATGCAAAGAATGTGGGAAGGCCTTTAGTAGTGGCTCCAACTTTACTCAGCACCAGA
GAATTCATACAGGGGAGAAACCCTATGAATGTAAGGAATGTGGCAATGCCTTTAGTCAGA
GCTCACAACTTATTAAACATCTGAGAATCCACACAGGAGAGAAACCCTATGAATGTAAGG
AATGTGAAAAGGCTTTTCGTTCTGGTTCAGACCTCACTCGGCATCAGAGAATTCACACTG
GTGAGAAGCCCTATGAATGTAAGATATGTGGGAAAGCCTATTCTCAGAGTTCACAACTTA
TTAGTCATCATAGAAGTCATACTGGTGAGAAACCCTATGAATACAGGGAATGTGGGAAGA
CCTTCAATTTTGACTCACAGCTTATTCAACATCAAAATTTGTACTGGTGATAAAACAATA
TATGAAATGTATGGGAATGCTTTTAATTACAGCTCAAAATTATTCAGTTATTCAGCAAAA
GAGACTTTGATAATGGATCCCTCTACATAGAATAATGTAGAAACATCTTAATTGTTGACT
GCAGCTTGTTCAGCCCAAGAAAAATCATTCAGGAAAAGCACCCCATCAATACATTTTGGA
AACCCTTTAATAAAAGCTCCTATTTCTCTTGCCATCAGATAGTTCAGTCTAGTATTGAAA
GTGGCAACGGCACTTTGGGGACCTTTCCAACCTTATCATGAGCATCAGAGAATACATCCT
GAAATGAAATCCTGTGATTTTCATTTTCTTTCTTCCAATTACATTCTTAGTCTTTTAATC
CATCTTAAATTTGTAAAGTCCATCTATTTACATCATGGTTTGTAAAATGCCTTTATAAGA
TACCTTCAATATCCAGGAGAAGTGACCTTTTTATTTTTGAAGATGGCTTATTCCTTTTGC
TCTTTACAAAATTTAGACTTCCTTATTGTAAAAACCTTCATGAACAACTTACCACTCAGT
AAATAGAGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTAGTAGTGGCTCCAACTTCACTCGACATCAGAGAATTCACACTGGTGAGAAGCCCT
ATGAATGCAAAGAATGTGGGAAGGCCTTTAGTAGTGGCTCCAACTTTACTCAGCACCAGA
GAATTCATACAGGGGAGAAACCCTATGAATGTAAGGAATGTGGCAATGCCTTTAGTCAGA
GCTCACAACTTATTAAACATCTGAGAATCCACACAGGAGAGAAACCCTATGAATGTAAGG
AATGTGAAAAGGCTTTTCGTTCTGGTTCAGACCTCACTCGGCATCAGAGAATTCACACTG
GTGAGAAGCCCTATGAATGTAAGATATGTGGGAAAGCCTATTCTCAGAGTTCACAACTTA
TTAGTCATCATAGAAGTCATACTGGTGAGAAACCCTATGAATACAGGGAATGTGGGAAGA
CCTTCAATTTTGACTCACAGCTTATTCAACATCAAAATTTGTACTGGTGATAAAACAATA
TATGAAATGTATGGGAATGCTTTTAATTACAGCTCAAAATTATTCAGTTATTCAGCAAAA
GAGACTTTGATAATGGATCCCTCTACATAGAATAATGTAGAAACATCTTAATTGTTGACT
GCAGCTTGTTCAGCCCAAGAAAAATCATTCAGGAAAAGCACCCCATCAATACATTTTGGA
AACCCTTTAATAAAAGCTCCTATTTCTCTTGCCATCAGATAGTTCAGTCTAGTATTGAAA
GTGGCAACGGCACTTTGGGGACCTTTCCAACCTTATCATGAGCATCAGAGAATACATCCT
GAAATGAAATCCTGTGATTTTCATTTTCTTTCTTCCAATTACATTCTTAGTCTTTTAATC
CATCTTAAATTTGTAAAGTCCATCTATTTACATCATGGTTTGTAAAATGCCTTTATAAGA
TACCTTCAATATCCAGGAGAAGTGACCTTTTTATTTTTGAAGATGGCTTATTCCTTTTGC
TCTTTACAAAATTTAGACTTCCTTATTGTAAAAACCTTCATGAACAACTTACCACTCAGT
AAATAGAGATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               ZN345_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ZN345_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-360, + strand, RNAz p=0.524135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-360, + strand, RNAz p=0.524135

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr10 (8996812-8996292)
               

               
               1-516, gnl|Hg17|chr19 (42818617-42818013)
               

               
               1-516, gnl|Mm7|chr2 (127310243-127309723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr10 (8996812-8996292)
               

               
               1-516, gnl|Hg17|chr19 (42818617-42818013)
               

               
               1-516, gnl|Mm7|chr2 (127310243-127309723)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               isp (0.150376)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               isp (0.150376)

	1-516, gnl\|bosTau2\|chr10 (8996812-8996292)
	1-516, gnl\|Hg17\|chr19 (42818617-42818013)
	1-516, gnl\|Mm7\|chr2 (127310243-127309723)