Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J02.5

Sequence:


               
               GCGGCCGCCCTTCCTCGACGAAGGCCGTTGTCCTTCGCGACGGTCAGAGTGAAGACCCCC
CGGCGGACCCCCATCATGCCCACGGCCAACATCAAGCTCCCGCCTGGCCTGCCTGCCTAT
CTCACTGGCCGGGCACTGGGCACCCAGGAAGCTGCTGCCCCTGTGAGGCGCCGAGAGCCG
CCTGCCCGCCGCCCGGACCAGGTACACTCTGTGTACGTCACGCCTGGCGCTAACCTGCCC
TCGCAGGGCCCTCAGGAGACCCTAGACAAGGATGACCGGCCTCCTGGGGCCAAGCGGAGG
TACTCGGACCCCCCAACCTACTGCCTACCCCCTGCCTCGGGCCAGGCCAATGGCTGAGGG
CCCACAGCTGCCAGAGTCTGGACATCCAAGGACGGCCTGGTGCCGCGGCCCAAGCGCTGG
AGCTCCAGAGCCTGCATTCAGCGGTCTGAGAAGGATCCGGAATGAAAAGCTCCAAGAGCG
ACGTGAGGTGGGCACTGGCTCCAAGTGAGTCCAGGCAGGGAGAGGCCGGCTGAGACCCGG
CCACCCTTGCTGAGCCCCCACGTCGCACAGAGGTGCCCGCCCAGAGCACCAAATCACGGT
GGGCAGCCTGGCGTCTCCCAACTTCCCTTTTATATGTTTTTGAGGTCACTGTTTTCTTTG
TGCGTGGTTTACATAACTTTAAACTGTAACAGCCTTAACAGAGGACCAAATCGGTTTTTT
ATATGTGTATGTACAAACTTTTGTATTAACGCCCTGCATCTCCCTTATAACCTGGACATG
AGTCTTCAGAGCAAAGCCCACACAGCCGCCAAGCTTTGGAGGCTCAGACCCAATGCTGAA
GCACAGCTCGGGGCAGACCAAGGGCTGGGACCCTGCCTAAGGGATTTGGACACTTGAGGC
ACACGACTGCCCCAAGTCTATCTCAGATTCGTACGCCAGCCTGGCTGACATGCATTCGAG
GGAGCAGTGGAACCTTCCATGGTGATCGATTGTTGGCTGGAGCCAGGCAGTAGGCGGCCT
CCACTCCAGGCACCACAGACCTCACATCCCAGGGAGTCTCGAATGTGGCCATCGCTCCTC
TGTTCACTGTGCCTTGGACCCAGGAGGCTGGAGTAGGCCGCCCTTGGCACTGCCCGCCCC
CTGTGGCAGAACAAGAGCCCGCAACTCAGGACTGATCATGGGTGGGGAGGGCAAGGCCTA
GGGTTGTACGTCCCTGCAAGTCTACGGCGACAGCCTGGGCAGCTGGCATCTCTGGAGCGA
GGCTCTCTTCTTAGGCTCAGCTCACTCTCCAGATACCTGGACACATGGCCACAGGTCTGG
GACAAGAGGCATCTGCAAGCCATGTGAAATAAAAAAAAAGTGCCTGAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCCTTCCTCGACGAAGGCCGTTGTCCTTCGCGACGGTCAGAGTGAAGACCCCC
CGGCGGACCCCCATCATGCCCACGGCCAACATCAAGCTCCCGCCTGGCCTGCCTGCCTAT
CTCACTGGCCGGGCACTGGGCACCCAGGAAGCTGCTGCCCCTGTGAGGCGCCGAGAGCCG
CCTGCCCGCCGCCCGGACCAGGTACACTCTGTGTACGTCACGCCTGGCGCTAACCTGCCC
TCGCAGGGCCCTCAGGAGACCCTAGACAAGGATGACCGGCCTCCTGGGGCCAAGCGGAGG
TACTCGGACCCCCCAACCTACTGCCTACCCCCTGCCTCGGGCCAGGCCAATGGCTGAGGG
CCCACAGCTGCCAGAGTCTGGACATCCAAGGACGGCCTGGTGCCGCGGCCCAAGCGCTGG
AGCTCCAGAGCCTGCATTCAGCGGTCTGAGAAGGATCCGGAATGAAAAGCTCCAAGAGCG
ACGTGAGGTGGGCACTGGCTCCAAGTGAGTCCAGGCAGGGAGAGGCCGGCTGAGACCCGG
CCACCCTTGCTGAGCCCCCACGTCGCACAGAGGTGCCCGCCCAGAGCACCAAATCACGGT
GGGCAGCCTGGCGTCTCCCAACTTCCCTTTTATATGTTTTTGAGGTCACTGTTTTCTTTG
TGCGTGGTTTACATAACTTTAAACTGTAACAGCCTTAACAGAGGACCAAATCGGTTTTTT
ATATGTGTATGTACAAACTTTTGTATTAACGCCCTGCATCTCCCTTATAACCTGGACATG
AGTCTTCAGAGCAAAGCCCACACAGCCGCCAAGCTTTGGAGGCTCAGACCCAATGCTGAA
GCACAGCTCGGGGCAGACCAAGGGCTGGGACCCTGCCTAAGGGATTTGGACACTTGAGGC
ACACGACTGCCCCAAGTCTATCTCAGATTCGTACGCCAGCCTGGCTGACATGCATTCGAG
GGAGCAGTGGAACCTTCCATGGTGATCGATTGTTGGCTGGAGCCAGGCAGTAGGCGGCCT
CCACTCCAGGCACCACAGACCTCACATCCCAGGGAGTCTCGAATGTGGCCATCGCTCCTC
TGTTCACTGTGCCTTGGACCCAGGAGGCTGGAGTAGGCCGCCCTTGGCACTGCCCGCCCC
CTGTGGCAGAACAAGAGCCCGCAACTCAGGACTGATCATGGGTGGGGAGGGCAAGGCCTA
GGGTTGTACGTCCCTGCAAGTCTACGGCGACAGCCTGGGCAGCTGGCATCTCTGGAGCGA
GGCTCTCTTCTTAGGCTCAGCTCACTCTCCAGATACCTGGACACATGGCCACAGGTCTGG
GACAAGAGGCATCTGCAAGCCATGTGAAATAAAAAAAAAGTGCCTGAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6002749|gb|AAF00122.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6002749|gb|AAF00122.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               200-319, - strand, RNAz p=0.619266
               

               
               517-634, - strand, RNAz p=0.995596
               

               
               1095-1365, + strand, RNAz p=0.999911

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.619266
               

               
               517-634, - strand, RNAz p=0.995596
               

               
               1095-1365, + strand, RNAz p=0.999911

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004145, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004145, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1365, gnl|bosTau2|chr7 (2854836-2853491)
               

               
               1-1365, gnl|Hg17|chr19 (17183763-17185090)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1365, gnl|bosTau2|chr7 (2854836-2853491)
               

               
               1-1365, gnl|Hg17|chr19 (17183763-17185090)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ill (0.351185)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	200-319, - strand, RNAz p=0.619266
	517-634, - strand, RNAz p=0.995596
	1095-1365, + strand, RNAz p=0.999911

	1-1365, gnl\|bosTau2\|chr7 (2854836-2853491)
	1-1365, gnl\|Hg17\|chr19 (17183763-17185090)

	ill (0.351185)
	fce (0.271592)
	jca (0.22792)
	fli (0.202881)
	fcc (0.197785)
	fty (0.17584)
	fhi (0.169578)
	csp (0.161186)
	lnt (0.142308)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)