Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J04.5.5

Sequence:


               
               GTGCAAGGTTGGGGGTGTGTCCGAAGCCTTGACGGCCTTCACGGGCCCTTTTAAAGGACC
TCTGGGGGCAGACGGATGTTGAGCGCAGCACATGCTTCTCTTGGGGAAGAACCGGTCGCC
AGACTTCCGAGGGCCCTTCCTCCGGGCGGGAGTTTCCTCCGTTCGGCCCCCGTGGTTCGT
TCGTGTCCCCAGGTGGGGCAGTAACTAAAAGGTGGTGGTGGTAGTCGGCTCCCACGTCTG
GGAAGGGTTTCCGTCAGGCCTCGGTTCAGGCACACTGGACGGTTTGCCTCTTGCAGGTCG
AAGTGGGTCTGATTGGAAAAGGGATGGTCTGGATCCAAGCAAACATGTAAATAGAGTTCT
CAGGTCTCCACTGGGCTCATCCCGCCGGATTTCCCTGCAGTTGTCACGTCACACTAGGAG
CAGGAACCAAGAAATCCAAGCTTTTGGGTGTCTTCAGGTTGTGTTTTGAATTCTGCTGAG
AAGCGAACACTAACATGCTCTAGGTTTTTCCAAGGCTGTTTTTAGTCCACTGACGGTTAT
TGAAGGAGGTGGCCCAGGTGGCAAATTCATGACACCAGTACGCTGAGGCTCCTGCAGCAG
CACTTTGTCCCGGCTCCGGTTGGGATTTGCCTTTTATTGCAACTACTGGCCATTCTCTCT
CAATTCCTCTGAGGCTTGTTCTGGTTATAGTTACTATTTAATATTGAGACTATTTTACTG
AGCAGACTTTATAAATGAGGTATCTGCAAGGCACTTAAAAGTGTTACAGATGTTTTACCT
TAAAGTTATTTAAGTTTTATTGGGTTAAGACAGTTTTTGGGGTACTGTAAATGTTATTTT
CAGGAAAAGATAGAATGATGGTGCTGACTGGTTTTCTGAAGAGTTTTATGTATATTGCAC
AACAGTCCTCAAATAAACAAATCTACATAAAGTAGCATTTTTTTCACTCTAGTTAGAATT
CGAACTAATGCCTATGCAGTTAAGTTGGATAAAATGTATACAGATGTTTCATATATTACA
GGATAAATATATAAATCAAAATTTCCTATATAAAGCTAAAACTGGGAGTTGGGGTGGAAA
TATTTTGAATATTTATTTTTAAAGACGCAAGATAGGACTTTGTGCAATGTATTTTTGTAA
ATGCTTTTCAAGATATTTGTCTCTGGTAGTGCTTCTTTTGCTGCCACCAAATTATAAGAT
GCTATTGAAATGTTTAAATAAAGAGTTTTACTTTTTAAAAGTGCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAAGGTTGGGGGTGTGTCCGAAGCCTTGACGGCCTTCACGGGCCCTTTTAAAGGACC
TCTGGGGGCAGACGGATGTTGAGCGCAGCACATGCTTCTCTTGGGGAAGAACCGGTCGCC
AGACTTCCGAGGGCCCTTCCTCCGGGCGGGAGTTTCCTCCGTTCGGCCCCCGTGGTTCGT
TCGTGTCCCCAGGTGGGGCAGTAACTAAAAGGTGGTGGTGGTAGTCGGCTCCCACGTCTG
GGAAGGGTTTCCGTCAGGCCTCGGTTCAGGCACACTGGACGGTTTGCCTCTTGCAGGTCG
AAGTGGGTCTGATTGGAAAAGGGATGGTCTGGATCCAAGCAAACATGTAAATAGAGTTCT
CAGGTCTCCACTGGGCTCATCCCGCCGGATTTCCCTGCAGTTGTCACGTCACACTAGGAG
CAGGAACCAAGAAATCCAAGCTTTTGGGTGTCTTCAGGTTGTGTTTTGAATTCTGCTGAG
AAGCGAACACTAACATGCTCTAGGTTTTTCCAAGGCTGTTTTTAGTCCACTGACGGTTAT
TGAAGGAGGTGGCCCAGGTGGCAAATTCATGACACCAGTACGCTGAGGCTCCTGCAGCAG
CACTTTGTCCCGGCTCCGGTTGGGATTTGCCTTTTATTGCAACTACTGGCCATTCTCTCT
CAATTCCTCTGAGGCTTGTTCTGGTTATAGTTACTATTTAATATTGAGACTATTTTACTG
AGCAGACTTTATAAATGAGGTATCTGCAAGGCACTTAAAAGTGTTACAGATGTTTTACCT
TAAAGTTATTTAAGTTTTATTGGGTTAAGACAGTTTTTGGGGTACTGTAAATGTTATTTT
CAGGAAAAGATAGAATGATGGTGCTGACTGGTTTTCTGAAGAGTTTTATGTATATTGCAC
AACAGTCCTCAAATAAACAAATCTACATAAAGTAGCATTTTTTTCACTCTAGTTAGAATT
CGAACTAATGCCTATGCAGTTAAGTTGGATAAAATGTATACAGATGTTTCATATATTACA
GGATAAATATATAAATCAAAATTTCCTATATAAAGCTAAAACTGGGAGTTGGGGTGGAAA
TATTTTGAATATTTATTTTTAAAGACGCAAGATAGGACTTTGTGCAATGTATTTTTGTAA
ATGCTTTTCAAGATATTTGTCTCTGGTAGTGCTTCTTTTGCTGCCACCAAATTATAAGAT
GCTATTGAAATGTTTAAATAAAGAGTTTTACTTTTTAAAAGTGCATGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               5-1247, gnl|bosTau2|chr25 (40181803-40180568)
               

               
               5-1247, gnl|Hg17|chr7 (686528-687784)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1247, gnl|bosTau2|chr25 (40181803-40180568)
               

               
               5-1247, gnl|Hg17|chr7 (686528-687784)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               ctl (0.918414)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               ldo (0.485013)
               

               
               amn (0.417711)
               

               
               rec (0.346141)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.918414)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               ldo (0.485013)
               

               
               amn (0.417711)
               

               
               rec (0.346141)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	5-1247, gnl\|bosTau2\|chr25 (40181803-40180568)
	5-1247, gnl\|Hg17\|chr7 (686528-687784)

	ctl (0.918414)
	pro (0.512033)
	cut (0.509771)
	ldo (0.485013)
	amn (0.417711)
	rec (0.346141)
	cki (0.330469)
	fat (0.294855)
	liv (0.292569)
	spl (0.286369)
	csk (0.281492)
	cst (0.280073)
	ste (0.270416)
	mgp (0.230681)
	sag (0.182715)
	sin (0.174948)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)