Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J08.3

Sequence:


               
               TTACCTGCGAACCATGACTCACATCGTCTTTGTAGACTTTGATAACTGGTCCAACTTTTT
TGGTCATCTACCAGGGCATCTTAACCAAGGAACCTTTATTTGGGGCTTTCAAGGAGGAAA
CACCAACTGGAAGCCTCCCATCAACTGCAAGATCTATAATTACCTGAACAGAATTGGATG
CTTCTTCCTTCATCCTCGCTGTAGTAAAAGAAAAGATGCTGCTGATTTTGCCATTTGTAT
GCATGCTGGCCGTCTCGACGAACAACTGCCCAAGCAAATTCCTTTCACCATTCTCTCTGG
AGATCAAGGTTTTCTGGAGCTAGAGAATCAATTTAAGAAGACTCAGAGGCCAGCACATAT
ACTGAACCCTCACCACTTAGAGGGAGACATGATGTGTGCCTTGTTAAATAGCATATCTGA
TACCACCAAAGAATGTGACAGTGATGATAACCTGGGTATCAAAAGTACTTCAATGGGAGA
AGAATTCAGATCCACAGAAGATGTGGAATTAGAAGAAGCAATTAGAAGAAGTCTTGAGGA
GATGTAATTAAAGATATTACCACACAACATCAAGTGGCCTTGAAGAGACTCAGGATAATG
AATTTTTGAGTTTTCTAAAGGAGACTAGAAATCTACTAGTGCAGATGTATTTGAAAACAC
GCTTTTTTTGCTTTCATATGTTCAAAATATGATATTGCTTTGTATTTTTGTGCTACTTTG
CAAAAATGTATAGAGGAATAGAATACATGTTCATGCAAATACAAATCATGTGTTCTAAAA
CAGGTGTCACCGTTTCCCAGTTAATGTTGAAGTCATATATTTAGGTTAAAGGAATTAAAA
AAAAGAAAAGAAAAGCTCTTGACTATTGTTTACATGTTTCCCAAATAGAGTTTGTTTTTT
AATTTTATTTGTACTGTACAGATAATTCTAGCTTATTTTTTTAGGAGTGAAAATGAATAT
AAATAAAGCTGCCATAGCTCACTTTTTCTGTAAAGCCTACGTCTGATGTGGCACTAATAC
CTAATGCCTTTGAGATCTTCGATTATGATTATTGGAAGAGAGTGATGGAAGTGACCGTGG
AAACATGAAGTTCCCCAGCAGTGTTCTCTGTGGGTGTCAGACGGGCAGTCCTGCTTTAAT
TAGAGCAGCACATCGCTGGGATGTAGAAAAGGAACACCTCATTTCTTAGAAAGTATTAAA
AAGAAACTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCTGCGAACCATGACTCACATCGTCTTTGTAGACTTTGATAACTGGTCCAACTTTTT
TGGTCATCTACCAGGGCATCTTAACCAAGGAACCTTTATTTGGGGCTTTCAAGGAGGAAA
CACCAACTGGAAGCCTCCCATCAACTGCAAGATCTATAATTACCTGAACAGAATTGGATG
CTTCTTCCTTCATCCTCGCTGTAGTAAAAGAAAAGATGCTGCTGATTTTGCCATTTGTAT
GCATGCTGGCCGTCTCGACGAACAACTGCCCAAGCAAATTCCTTTCACCATTCTCTCTGG
AGATCAAGGTTTTCTGGAGCTAGAGAATCAATTTAAGAAGACTCAGAGGCCAGCACATAT
ACTGAACCCTCACCACTTAGAGGGAGACATGATGTGTGCCTTGTTAAATAGCATATCTGA
TACCACCAAAGAATGTGACAGTGATGATAACCTGGGTATCAAAAGTACTTCAATGGGAGA
AGAATTCAGATCCACAGAAGATGTGGAATTAGAAGAAGCAATTAGAAGAAGTCTTGAGGA
GATGTAATTAAAGATATTACCACACAACATCAAGTGGCCTTGAAGAGACTCAGGATAATG
AATTTTTGAGTTTTCTAAAGGAGACTAGAAATCTACTAGTGCAGATGTATTTGAAAACAC
GCTTTTTTTGCTTTCATATGTTCAAAATATGATATTGCTTTGTATTTTTGTGCTACTTTG
CAAAAATGTATAGAGGAATAGAATACATGTTCATGCAAATACAAATCATGTGTTCTAAAA
CAGGTGTCACCGTTTCCCAGTTAATGTTGAAGTCATATATTTAGGTTAAAGGAATTAAAA
AAAAGAAAAGAAAAGCTCTTGACTATTGTTTACATGTTTCCCAAATAGAGTTTGTTTTTT
AATTTTATTTGTACTGTACAGATAATTCTAGCTTATTTTTTTAGGAGTGAAAATGAATAT
AAATAAAGCTGCCATAGCTCACTTTTTCTGTAAAGCCTACGTCTGATGTGGCACTAATAC
CTAATGCCTTTGAGATCTTCGATTATGATTATTGGAAGAGAGTGATGGAAGTGACCGTGG
AAACATGAAGTTCCCCAGCAGTGTTCTCTGTGGGTGTCAGACGGGCAGTCCTGCTTTAAT
TAGAGCAGCACATCGCTGGGATGTAGAAAAGGAACACCTCATTTCTTAGAAAGTATTAAA
AAGAAACTTCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18490537|gb|AAH22767.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18490537|gb|AAH22767.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               245-403, - strand, RNAz p=0.791476

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-403, - strand, RNAz p=0.791476

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               1-114, gnl|bosTau2|chr23 (2177669-2177782)
               

               
               1-114, gnl|canFam2|chr12 (27327794-27328009)
               

               
               1-114, gnl|dasNov1|scaffold_5347 (39133-38921)
               

               
               1-114, gnl|echTel1|scaffold_221781 (9885-9672)
               

               
               1-114, gnl|galGal2|chr3 (85098323-85098136)
               

               
               1-114, gnl|hg17|chr6 (57123409-57123622)
               

               
               1-114, gnl|Hg17|chr6 (57123507-57123620)
               

               
               1-114, gnl|loxAfr1|scaffold_111457 (5094-5309)
               

               
               1-114, gnl|mm7|chr1 (33995936-33995711)
               

               
               1-114, gnl|Mm7|chr1 (33995824-33995711)
               

               
               1-114, gnl|monDom2|scaffold_0 (178190543-178190332)
               

               
               1-114, gnl|oryCun1|scaffold_215129 (123284-123070)
               

               
               1-114, gnl|panTro1|chr5 (58376137-58376350)
               

               
               1-114, gnl|rheMac2|chr4 (56785527-56785740)
               

               
               1-114, gnl|rn3|chr9 (32522412-32522187)
               

               
               1-114, gnl|xenTro1|scaffold_221 (1599796-1600013)
               


               
               245-431, gnl|bosTau2|chr23 (2185608-2185794)
               

               
               245-431, gnl|Hg17|chr6 (57126618-57126804)
               

               
               245-431, gnl|Mm7|chr1 (33992726-33992540)
               


               
               499-1209, gnl|bosTau2|chr23 (2205813-2206534)
               

               
               499-1209, gnl|Hg17|chr6 (57141178-57141881)
               

               
               499-1209, gnl|Mm7|chr1 (33985271-33984591)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-114, gnl|bosTau2|chr23 (2177669-2177782)
               

               
               1-114, gnl|canFam2|chr12 (27327794-27328009)
               

               
               1-114, gnl|dasNov1|scaffold_5347 (39133-38921)
               

               
               1-114, gnl|echTel1|scaffold_221781 (9885-9672)
               

               
               1-114, gnl|galGal2|chr3 (85098323-85098136)
               

               
               1-114, gnl|hg17|chr6 (57123409-57123622)
               

               
               1-114, gnl|Hg17|chr6 (57123507-57123620)
               

               
               1-114, gnl|loxAfr1|scaffold_111457 (5094-5309)
               

               
               1-114, gnl|mm7|chr1 (33995936-33995711)
               

               
               1-114, gnl|Mm7|chr1 (33995824-33995711)
               

               
               1-114, gnl|monDom2|scaffold_0 (178190543-178190332)
               

               
               1-114, gnl|oryCun1|scaffold_215129 (123284-123070)
               

               
               1-114, gnl|panTro1|chr5 (58376137-58376350)
               

               
               1-114, gnl|rheMac2|chr4 (56785527-56785740)
               

               
               1-114, gnl|rn3|chr9 (32522412-32522187)
               

               
               1-114, gnl|xenTro1|scaffold_221 (1599796-1600013)
               


               
               245-431, gnl|bosTau2|chr23 (2185608-2185794)
               

               
               245-431, gnl|Hg17|chr6 (57126618-57126804)
               

               
               245-431, gnl|Mm7|chr1 (33992726-33992540)
               


               
               499-1209, gnl|bosTau2|chr23 (2205813-2206534)
               

               
               499-1209, gnl|Hg17|chr6 (57141178-57141881)
               

               
               499-1209, gnl|Mm7|chr1 (33985271-33984591)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-114, gnl\|bosTau2\|chr23 (2177669-2177782)
	1-114, gnl\|canFam2\|chr12 (27327794-27328009)
	1-114, gnl\|dasNov1\|scaffold_5347 (39133-38921)
	1-114, gnl\|echTel1\|scaffold_221781 (9885-9672)
	1-114, gnl\|galGal2\|chr3 (85098323-85098136)
	1-114, gnl\|hg17\|chr6 (57123409-57123622)
	1-114, gnl\|Hg17\|chr6 (57123507-57123620)
	1-114, gnl\|loxAfr1\|scaffold_111457 (5094-5309)
	1-114, gnl\|mm7\|chr1 (33995936-33995711)
	1-114, gnl\|Mm7\|chr1 (33995824-33995711)
	1-114, gnl\|monDom2\|scaffold_0 (178190543-178190332)
	1-114, gnl\|oryCun1\|scaffold_215129 (123284-123070)
	1-114, gnl\|panTro1\|chr5 (58376137-58376350)
	1-114, gnl\|rheMac2\|chr4 (56785527-56785740)
	1-114, gnl\|rn3\|chr9 (32522412-32522187)
	1-114, gnl\|xenTro1\|scaffold_221 (1599796-1600013)

	245-431, gnl\|bosTau2\|chr23 (2185608-2185794)
	245-431, gnl\|Hg17\|chr6 (57126618-57126804)
	245-431, gnl\|Mm7\|chr1 (33992726-33992540)

	499-1209, gnl\|bosTau2\|chr23 (2205813-2206534)
	499-1209, gnl\|Hg17\|chr6 (57141178-57141881)
	499-1209, gnl\|Mm7\|chr1 (33985271-33984591)

	ill (0.175593)
	rec (0.17307)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)