Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J18.5

Sequence:


               
               GCCGCCGCCGCCGCCATGGCCGCGCCGGCCCCCGGCCTCATCTCGGTTTTCTCGAGCCCG
CAGGAGCTGGGCGCGTCGCTGGCGCAACTGGTAGCGCAGCAGGCAGCGTGCTGCCTGGCG
GGGGCCCGCGGCCGCTTCGCGCTTGGCCTGTCAGGCGGTAGCCTTGTCTCCATGCTGGCC
CGCGAGCTGCCCGCCTCCGCTGCCCCGGCCGGGGCCGCCAACCTCGCGCGCTGGACTCTG
GGCTTCTGCGACGAGCGCCTGGTGCCCTTCGAGCACGCCGAGAGCACGTACGGGCTCTAC
CGGACCCACCTGCTCTCCAAGCTGCCTATCCCTGACAGCCAGGTGATCACCATTAACCCT
GAGCTGCCCGTGGAGGAGGCAGCTGAGGACTATGCCAAGAAGCTGAGGCAGGCCTTCCCA
GGGGACTCCATCCCAGTTTTTGACCTGCTGATTCTTGGTGTGGGTCCTGATGGCCACACC
TGCTCACTCTTCCCAGACCACCCCCTTCTACAGGAACGGGAGAAGATTGTGGCCCCCATC
AGTGACTCCCCGAAGCCACCTCCTCAGCGTGTGACCCTCACACTTCCTGTGCTGAATGCA
GCTCGAATGGTCATCTTTGTGGCAACTGGAGAAGGCAAAGCAGCTATTCTGAAGCGCATT
TTGGAGGACAAGGAGGAGAATCCACTCCCCGCCACCCTGGTCCAGCCCCACACAGGGAAA
CTCTGCTGGTTCCTGGATGAGGCAGCAGCCAGACTCTTGACTGTGCCCTTCGAGAAGCAT
TCCACTTTGTAGCCGGCGCTGAGAGATGCTACAGCTGGGACCACATGCAGCCCAATGGGC
TGGGACCTTCTGGGGCTGGGCCCCACTGCCAAGCCCACCCTGGGCTTCATTTTAGAAAAG
CCACGTGGCACCACTGGAAGTCAACAGGGCCCACCACCAGCCCTGCCCAGGGGCTCAGCC
CATGGGCTGTGGCCCTGGGTGACTCAGTTATTAAAAGAAGCATTTGTTTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCGCCGCCGCCATGGCCGCGCCGGCCCCCGGCCTCATCTCGGTTTTCTCGAGCCCG
CAGGAGCTGGGCGCGTCGCTGGCGCAACTGGTAGCGCAGCAGGCAGCGTGCTGCCTGGCG
GGGGCCCGCGGCCGCTTCGCGCTTGGCCTGTCAGGCGGTAGCCTTGTCTCCATGCTGGCC
CGCGAGCTGCCCGCCTCCGCTGCCCCGGCCGGGGCCGCCAACCTCGCGCGCTGGACTCTG
GGCTTCTGCGACGAGCGCCTGGTGCCCTTCGAGCACGCCGAGAGCACGTACGGGCTCTAC
CGGACCCACCTGCTCTCCAAGCTGCCTATCCCTGACAGCCAGGTGATCACCATTAACCCT
GAGCTGCCCGTGGAGGAGGCAGCTGAGGACTATGCCAAGAAGCTGAGGCAGGCCTTCCCA
GGGGACTCCATCCCAGTTTTTGACCTGCTGATTCTTGGTGTGGGTCCTGATGGCCACACC
TGCTCACTCTTCCCAGACCACCCCCTTCTACAGGAACGGGAGAAGATTGTGGCCCCCATC
AGTGACTCCCCGAAGCCACCTCCTCAGCGTGTGACCCTCACACTTCCTGTGCTGAATGCA
GCTCGAATGGTCATCTTTGTGGCAACTGGAGAAGGCAAAGCAGCTATTCTGAAGCGCATT
TTGGAGGACAAGGAGGAGAATCCACTCCCCGCCACCCTGGTCCAGCCCCACACAGGGAAA
CTCTGCTGGTTCCTGGATGAGGCAGCAGCCAGACTCTTGACTGTGCCCTTCGAGAAGCAT
TCCACTTTGTAGCCGGCGCTGAGAGATGCTACAGCTGGGACCACATGCAGCCCAATGGGC
TGGGACCTTCTGGGGCTGGGCCCCACTGCCAAGCCCACCCTGGGCTTCATTTTAGAAAAG
CCACGTGGCACCACTGGAAGTCAACAGGGCCCACCACCAGCCCTGCCCAGGGGCTCAGCC
CATGGGCTGTGGCCCTGGGTGACTCAGTTATTAAAAGAAGCATTTGTTTGAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3860020|gb|AAC72960.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3860020|gb|AAC72960.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.507405
               

               
               812-1012, - strand, RNAz p=0.999993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.507405
               

               
               812-1012, - strand, RNAz p=0.999993

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-303, gnl|bosTau2|chr7 (4878360-4878058)
               

               
               1-303, gnl|Hg17|chr19 (17483467-17483769)
               

               
               1-303, gnl|Mm7|chr8 (70059372-70059666)
               


               
               409-514, gnl|bosTau2|chr7 (4872869-4872764)
               

               
               409-514, gnl|Hg17|chr19 (17489094-17489199)
               

               
               409-514, gnl|Mm7|chr8 (70061828-70061933)
               


               
               653-1012, gnl|bosTau2|chr7 (4870201-4869844)
               

               
               653-1012, gnl|Hg17|chr19 (17492751-17493097)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-303, gnl|bosTau2|chr7 (4878360-4878058)
               

               
               1-303, gnl|Hg17|chr19 (17483467-17483769)
               

               
               1-303, gnl|Mm7|chr8 (70059372-70059666)
               


               
               409-514, gnl|bosTau2|chr7 (4872869-4872764)
               

               
               409-514, gnl|Hg17|chr19 (17489094-17489199)
               

               
               409-514, gnl|Mm7|chr8 (70061828-70061933)
               


               
               653-1012, gnl|bosTau2|chr7 (4870201-4869844)
               

               
               653-1012, gnl|Hg17|chr19 (17492751-17493097)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               ese (0.632511)
               

               
               fty (0.527519)
               

               
               cag (0.453583)
               

               
               fcc (0.39557)
               

               
               eep (0.367692)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.632511)
               

               
               fty (0.527519)
               

               
               cag (0.453583)
               

               
               fcc (0.39557)
               

               
               eep (0.367692)
               

               
               med (0.232504)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	80-199, - strand, RNAz p=0.507405
	812-1012, - strand, RNAz p=0.999993

	1-303, gnl\|bosTau2\|chr7 (4878360-4878058)
	1-303, gnl\|Hg17\|chr19 (17483467-17483769)
	1-303, gnl\|Mm7\|chr8 (70059372-70059666)

	409-514, gnl\|bosTau2\|chr7 (4872869-4872764)
	409-514, gnl\|Hg17\|chr19 (17489094-17489199)
	409-514, gnl\|Mm7\|chr8 (70061828-70061933)

	653-1012, gnl\|bosTau2\|chr7 (4870201-4869844)
	653-1012, gnl\|Hg17\|chr19 (17492751-17493097)

	ese (0.632511)
	fty (0.527519)
	cag (0.453583)
	fcc (0.39557)
	eep (0.367692)
	med (0.232504)
	col (0.195008)
	nep (0.183925)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	eli (0.151814)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)