Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J19.3

Sequence:


               
               CTCAAACTGATGAGAGGAGGCCGAAGAGCTTGTAATCCCTGGGAGCCGGGAGAGAAGATG
GGAGAGGGGGCTGTTAAAATAAAGAGAACCAGTAAAAACAGTTGAAAGGTCCATCTTGAG
GAGGGAACATGACTTCTTGAGGGGAGAAAGCAAGGAGCGGGGAGGCACAAAGTTCAAGTT
CTGGAACATGTCCTGAGGTGGGCACTGCCCCTGGGATTGGTTCCGGAGGGACTGCATGGT
GGTGCTCTCAAGGCAGATGCTGAGTCCCAGAGAGAGCCCGCAGCCGTGGGTCTCACTCAG
TCTGCGCCTACTCAGGGAAATGACTTCGCTTCTCCCGGGTGCTGCTTTGATGAGGATGGA
AGCAAAATTATTTTGGGACACAAACAATTGGAAAAGTTTTTGTATATGCATTGAAATGTA
TCTGAGAGAGCCCTGGTGACAGTTTTCTTTAATGCCAGTTCAGATTAGTGATTCATTTAG
GAACCTGTGTTATTGCACAAGCACTCACAGGAAAAAAAGCAAACTTCCCTCCTACAAATT
AATAGGAGTGGATGGTAAGTGATCAGTCAAGGCCATTGAGGTATAAACCCCAAAGCAAAA
GCAGGGTCCACATGAGCACACAAGAAGCCAAAGTTTGTCCGTGAGCTTAATATAGCTGAG
TAATATCTTGCCTTTAAAAACTAACCCCAGGGTGGGGATGAGGGGATGGTAGATGGCGAG
GAAACATCTGGCTGAGAAAACCAGTAATAACGTATGCTTTGGAGCTGTATGGATGTGTCA
GTGAAAATGACCCCAACCAGGTATTGTAGAGGCTGGGGAAGGTGATGTGATGGAATTATA
CAGGTGATGCATACTTTTGTGTGGAGACTCAACAATGTGCTACAAATGTGATACTTAATC
CTGAACTGCATGTAATGGGGATTGTTTAAAAAAAAAATTTCAATGAATCAATAAATTAAC
AGTTTTTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAACTGATGAGAGGAGGCCGAAGAGCTTGTAATCCCTGGGAGCCGGGAGAGAAGATG
GGAGAGGGGGCTGTTAAAATAAAGAGAACCAGTAAAAACAGTTGAAAGGTCCATCTTGAG
GAGGGAACATGACTTCTTGAGGGGAGAAAGCAAGGAGCGGGGAGGCACAAAGTTCAAGTT
CTGGAACATGTCCTGAGGTGGGCACTGCCCCTGGGATTGGTTCCGGAGGGACTGCATGGT
GGTGCTCTCAAGGCAGATGCTGAGTCCCAGAGAGAGCCCGCAGCCGTGGGTCTCACTCAG
TCTGCGCCTACTCAGGGAAATGACTTCGCTTCTCCCGGGTGCTGCTTTGATGAGGATGGA
AGCAAAATTATTTTGGGACACAAACAATTGGAAAAGTTTTTGTATATGCATTGAAATGTA
TCTGAGAGAGCCCTGGTGACAGTTTTCTTTAATGCCAGTTCAGATTAGTGATTCATTTAG
GAACCTGTGTTATTGCACAAGCACTCACAGGAAAAAAAGCAAACTTCCCTCCTACAAATT
AATAGGAGTGGATGGTAAGTGATCAGTCAAGGCCATTGAGGTATAAACCCCAAAGCAAAA
GCAGGGTCCACATGAGCACACAAGAAGCCAAAGTTTGTCCGTGAGCTTAATATAGCTGAG
TAATATCTTGCCTTTAAAAACTAACCCCAGGGTGGGGATGAGGGGATGGTAGATGGCGAG
GAAACATCTGGCTGAGAAAACCAGTAATAACGTATGCTTTGGAGCTGTATGGATGTGTCA
GTGAAAATGACCCCAACCAGGTATTGTAGAGGCTGGGGAAGGTGATGTGATGGAATTATA
CAGGTGATGCATACTTTTGTGTGGAGACTCAACAATGTGCTACAAATGTGATACTTAATC
CTGAACTGCATGTAATGGGGATTGTTTAAAAAAAAAATTTCAATGAATCAATAAATTAAC
AGTTTTTCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               195-314, - strand, RNAz p=0.890509
               

               
               625-855, + strand, RNAz p=0.937624

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.890509
               

               
               625-855, + strand, RNAz p=0.937624

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK125922, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK125922, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-925, gnl|bosTau2|chr18 (22957484-22956569)
               

               
               8-925, gnl|Hg17|chr16 (56752247-56751330)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-925, gnl|bosTau2|chr18 (22957484-22956569)
               

               
               8-925, gnl|Hg17|chr16 (56752247-56751330)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fat (0.294855)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	195-314, - strand, RNAz p=0.890509
	625-855, + strand, RNAz p=0.937624

	8-925, gnl\|bosTau2\|chr18 (22957484-22956569)
	8-925, gnl\|Hg17\|chr16 (56752247-56751330)

	fat (0.294855)
	sug (0.254582)
	cbe (0.239234)
	tes (0.207814)
	hea (0.204499)
	cmu (0.186393)
	sin (0.174948)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	ldo (0.0970026)