Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J20.5

Sequence:


               
               GCGGCCTGCTGGAAATGATTTTCATCCCAAGAAATTCAGACAAGTGTTTCACTAAATAAA
ATTGGTCAGTCCCTGCCCTGGACCAGTTCTCAACAGTATTCCACATGGAAACCACCCATC
TTTGCTAGCTAATCCTCCTCACATGAACATTCTGTGGCCTATTGTGTTTTATCAGCTTAC
CTCCTCTGTGTTATCAGCATACCAGATGCACTGTTCTCCTAAGCATATTCAAGCCAGAAA
CCAGACTGCAAAGAACATATGGAGGCCAAGAGTTTGTGCAAGAAACTATAGCCTTAAAGG
ACCATTTCCACAAAACAGGTTTTGGAAAAATGGAGACATCAACAAACTCATTCTCATCTC
TTCTCTGTTCTACTGTGAGAAGGGAACCTTTTAATGTCTGGGGCAGAGGCACTCAAGTTG
ATTAGAAAGGTCCAGCTAACATCTGGATACCTATGGCCAAACATACATGGTAATTTGATT
TGGGGTTTGGTGGGATTTGGGGACTACAACATCCGAAGCCTTGAAGAAATGCTTACAAAT
TCAGCATGTGACTTTTTCTATAAATTATATTCAATTAACACTTATTTATTCACATGTGAT
TTATCTGCAGCAAAAGTTAAATCAGAGAATAGACTTGTGGCTGCCTCAGGGGAGAGGAAG
GGAGTGGGAGGAATCGGGAGCTTGGGGTTAATGGATGCAATCTATTGCTCTTGGAATGGA
TTTACAATGAGATCATGCTGTGTAGCATTGAGAACTATGTCTAGATACTTACATCGCAAC
ACAACAGTGGGAGGAAAAAGTATGTATACATGTATGTGTAACTTGGTCCCCATGCTGTAC
AACGGAAATAAATTAATTAATTAATTAAAAAAAAAGTTACATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCTGCTGGAAATGATTTTCATCCCAAGAAATTCAGACAAGTGTTTCACTAAATAAA
ATTGGTCAGTCCCTGCCCTGGACCAGTTCTCAACAGTATTCCACATGGAAACCACCCATC
TTTGCTAGCTAATCCTCCTCACATGAACATTCTGTGGCCTATTGTGTTTTATCAGCTTAC
CTCCTCTGTGTTATCAGCATACCAGATGCACTGTTCTCCTAAGCATATTCAAGCCAGAAA
CCAGACTGCAAAGAACATATGGAGGCCAAGAGTTTGTGCAAGAAACTATAGCCTTAAAGG
ACCATTTCCACAAAACAGGTTTTGGAAAAATGGAGACATCAACAAACTCATTCTCATCTC
TTCTCTGTTCTACTGTGAGAAGGGAACCTTTTAATGTCTGGGGCAGAGGCACTCAAGTTG
ATTAGAAAGGTCCAGCTAACATCTGGATACCTATGGCCAAACATACATGGTAATTTGATT
TGGGGTTTGGTGGGATTTGGGGACTACAACATCCGAAGCCTTGAAGAAATGCTTACAAAT
TCAGCATGTGACTTTTTCTATAAATTATATTCAATTAACACTTATTTATTCACATGTGAT
TTATCTGCAGCAAAAGTTAAATCAGAGAATAGACTTGTGGCTGCCTCAGGGGAGAGGAAG
GGAGTGGGAGGAATCGGGAGCTTGGGGTTAATGGATGCAATCTATTGCTCTTGGAATGGA
TTTACAATGAGATCATGCTGTGTAGCATTGAGAACTATGTCTAGATACTTACATCGCAAC
ACAACAGTGGGAGGAAAAAGTATGTATACATGTATGTGTAACTTGGTCCCCATGCTGTAC
AACGGAAATAAATTAATTAATTAATTAAAAAAAAAGTTACATCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-324, gnl|bosTau2|chr10 (41520735-41520413)
               

               
               5-324, gnl|Hg17|chr15 (49290351-49290008)
               

               
               5-324, gnl|Mm7|chr9 (54197440-54197135)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-324, gnl|bosTau2|chr10 (41520735-41520413)
               

               
               5-324, gnl|Hg17|chr15 (49290351-49290008)
               

               
               5-324, gnl|Mm7|chr9 (54197440-54197135)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               ste (0.135208)

	5-324, gnl\|bosTau2\|chr10 (41520735-41520413)
	5-324, gnl\|Hg17\|chr15 (49290351-49290008)
	5-324, gnl\|Mm7\|chr9 (54197440-54197135)