Non-Coding RNA Search

Ss1.1-Pig4-TMW8036J22.3

Sequence:


               
               TTATATTTTCACAATGTTAAGCTCTTTAGCAAGACTGCTTTTTCCTGCTGTGGATGACAA
CCTGCTTAAATTCCTCTATGATGATAATCAACGTGTAGAGCCTGAGTGGTATATTCCCAT
AATTCCCATGGTTCTAATAAATGGTGCTGAGGGTATTGGTACAGGATGGGCATGTAAGCT
ACCCAACTATGATGCTAGGGAAATTGTGAACAATGTCAGACGAATGCTGGATGGCTTGGA
TCCTCATCCCATGCTTCCAAACTACAAAAACTTTAAAGGAACAATCCAAGAACTTGGTCA
AAATCAATATGCAGTCAGTGGGGAAATATTTGTGGTGGATAGAAACACAGTGGAGATTAC
AGAGCTTCCAGTTAGAACATGGACACAGGTATATAAAGAACAGGTTTTAGAACCTATGCT
AAATGGAACAGATAAAACACCAGCCTCTGTGGTAGCCTTGACAACCAGCAGTCAGCAGCC
AACTGTGAAATTGAAAACAAGAAGCCTGAAAACCACAGGAGGGAGCATAATAGGGCTGGA
GTCGCTTCAAAGCCTCATTTCCAGAACTACTCTTACTTGTAATTCCATGGTACTCTTTGA
TCATATGGGATGTCTGAAGAAGTACGAAACTGTGCAAGATATTTTGAAAGAATTCTTTGA
TTTACGATTAAGCTATTATGGTTTACGTAAGGAATGGCTTGTAGGAATGTTGGGAGCAGA
ATCTACAAAGCTTAACAATCAAGCCCGTTTCATTTTAGAGAAGATACAAGGAAAAATTAC
TATAGAGAATAGGTCAAAGAAAGATTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATC
TGACCCAGTGAAAGCCTGGAAAGAAGCACAAGAAAAGGCAGCAGAAGAGGAAGAAACACA
AAACCAGCATGATGATAGTTCCTCTGACTCAGGAACACCTTCAGGCCCTGATTTTAATTA
TATTTTAAATATGTCCCTATGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATATTTTCACAATGTTAAGCTCTTTAGCAAGACTGCTTTTTCCTGCTGTGGATGACAA
CCTGCTTAAATTCCTCTATGATGATAATCAACGTGTAGAGCCTGAGTGGTATATTCCCAT
AATTCCCATGGTTCTAATAAATGGTGCTGAGGGTATTGGTACAGGATGGGCATGTAAGCT
ACCCAACTATGATGCTAGGGAAATTGTGAACAATGTCAGACGAATGCTGGATGGCTTGGA
TCCTCATCCCATGCTTCCAAACTACAAAAACTTTAAAGGAACAATCCAAGAACTTGGTCA
AAATCAATATGCAGTCAGTGGGGAAATATTTGTGGTGGATAGAAACACAGTGGAGATTAC
AGAGCTTCCAGTTAGAACATGGACACAGGTATATAAAGAACAGGTTTTAGAACCTATGCT
AAATGGAACAGATAAAACACCAGCCTCTGTGGTAGCCTTGACAACCAGCAGTCAGCAGCC
AACTGTGAAATTGAAAACAAGAAGCCTGAAAACCACAGGAGGGAGCATAATAGGGCTGGA
GTCGCTTCAAAGCCTCATTTCCAGAACTACTCTTACTTGTAATTCCATGGTACTCTTTGA
TCATATGGGATGTCTGAAGAAGTACGAAACTGTGCAAGATATTTTGAAAGAATTCTTTGA
TTTACGATTAAGCTATTATGGTTTACGTAAGGAATGGCTTGTAGGAATGTTGGGAGCAGA
ATCTACAAAGCTTAACAATCAAGCCCGTTTCATTTTAGAGAAGATACAAGGAAAAATTAC
TATAGAGAATAGGTCAAAGAAAGATTTGATTCAAATGTTAGTCCAGAGAGGTTATGAATC
TGACCCAGTGAAAGCCTGGAAAGAAGCACAAGAAAAGGCAGCAGAAGAGGAAGAAACACA
AAACCAGCATGATGATAGTTCCTCTGACTCAGGAACACCTTCAGGCCCTGATTTTAATTA
TATTTTAAATATGTCCCTATGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38305350|gb|AAR16193.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38305350|gb|AAR16193.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               17-253, gnl|bosTau2|chr19 (34262547-34262783)
               

               
               17-253, gnl|Hg17|chr17 (35810864-35810628)
               

               
               17-253, gnl|Mm7|chr11 (99113386-99113151)
               


               
               440-564, gnl|bosTau2|chr5 (41573464-41573581)
               


               
               567-777, gnl|bosTau2|chr19 (34263689-34263900)
               

               
               567-777, gnl|Hg17|chr17 (35809868-35809658)
               

               
               567-777, gnl|Mm7|chr11 (99112131-99111921)
               


               
               876-984, gnl|bosTau2|chr27 (26693646-26693754)
               

               
               876-984, gnl|Hg17|chr3 (25632083-25631975)
               

               
               876-984, gnl|Mm7|chr14 (14231703-14231811)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-253, gnl|bosTau2|chr19 (34262547-34262783)
               

               
               17-253, gnl|Hg17|chr17 (35810864-35810628)
               

               
               17-253, gnl|Mm7|chr11 (99113386-99113151)
               


               
               440-564, gnl|bosTau2|chr5 (41573464-41573581)
               


               
               567-777, gnl|bosTau2|chr19 (34263689-34263900)
               

               
               567-777, gnl|Hg17|chr17 (35809868-35809658)
               

               
               567-777, gnl|Mm7|chr11 (99112131-99111921)
               


               
               876-984, gnl|bosTau2|chr27 (26693646-26693754)
               

               
               876-984, gnl|Hg17|chr3 (25632083-25631975)
               

               
               876-984, gnl|Mm7|chr14 (14231703-14231811)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)

	17-253, gnl\|bosTau2\|chr19 (34262547-34262783)
	17-253, gnl\|Hg17\|chr17 (35810864-35810628)
	17-253, gnl\|Mm7\|chr11 (99113386-99113151)

	440-564, gnl\|bosTau2\|chr5 (41573464-41573581)

	567-777, gnl\|bosTau2\|chr19 (34263689-34263900)
	567-777, gnl\|Hg17\|chr17 (35809868-35809658)
	567-777, gnl\|Mm7\|chr11 (99112131-99111921)

	876-984, gnl\|bosTau2\|chr27 (26693646-26693754)
	876-984, gnl\|Hg17\|chr3 (25632083-25631975)
	876-984, gnl\|Mm7\|chr14 (14231703-14231811)