Ss1.1-Pig4-TMW8036K09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCCCCACGGTAAATAGGGCAGTTTCTTAGGCCAGCGTGAGACCTCGAGGTCGGAAGA TAACTGTCGCTGCCGCCTTGCCTTCGCCTCGTCCACGCCCGAGCCGGGTCACAGGCTCCT GAGCTCTTTCTGCTCCCCGTCGTCGGCTTCCCTCCGCGGCGCGACTCTCAGGGCCAAAAT GAGTCTGTTTGGAACAACCTCGGGTTTTGGAACCAGTGGGACTAGCATGTTTGGCAGCAC AACCACAGATAATCACAACCCTATGAAGGATATTGAAGTAACATCCTCTCCTGACGATAG CATTGGTTGTCTATCTTTTAGCCCACCCACCTTGCCGGGGAACTTTCTCATTGCAGGATC GTGGGCTAACGATGTTCGCTGCTGGGAAGTTCAGGATAGTGGACAGACTATTCCAAAAGC TCAGCAGATGCACACTGGGCCCGTGCTTGATGTCTGCTGGAGTGATGATGGGAGCAAAGT ATTTACAGCATCATGTGATAAAACTGCCAAAATGTGGGACCTCAACAGTAACCAGGCGAT ACAGATTGCACAGCATGATGCTCCTGTTAAAACCATACATTGGATCAAAGCACCAAACTA CAGCTGTGTGATGACGGGGAGCTGGGATAAGACGTTGAAGTTTTGGGATACACGGTCATC AAATCCTATGATGGTTTTGCAGCTCCCTGAAAGGTGTTACTGTGCTGACGTGATATACCC TATGGCCGTGGTGGCAACTGCAGAGAGGGGCCTGATTGTCTATCAGCTGGAGAATCAGCC CTCTGAATTCAGGTGATGTCTTTTTCCCCCCAAACTCCAGCATCGGTGTGTGGCCATTTT TAAAGACAAACAGAACAAGCCGACCGGTTTCGCCCTGGGGAGCATCGAGGGGAGAGTCGC CATTCACTACATCAACCCTCCGAACCCCGCCAAAGATAACTTCACCTTCAAGTGTCATCG CTCTAACGGGACCAACACGTCCGCTCCGCAGGACATCTACGCGGTAAACGGGATCGCATT CCATCCTGTTCACGGCACCCTTGCAACCGTGGGGTCTGATGGTAGATTCAGCTTCTGGGA CAAAGATGCCAGAACAAAACTCAAAACTTCGGAGCAGTTAGACCAGCCAATATCGGCTTG CTGCTTCAATCACAACGGAAACATATTTGCCTACGCTTCCAGCTACGACTGGTCAAAGGG ACATGAATTTTATAATCCCCAGAAGAAAAATTACATTTTCCTGCGTAACGCAGCTGAGGA GCTAAAACCCCGGAATAAGAAATAGTGGCTGGAGCCCTGTGGGTCGTCCAGAGTGTTCTC TCCACTCTGCTTCGTCTGTGTGTGAACTTGGGTCCCAGCTTCGGTGGGTTGTCAGCCATG AATGTGGATTTCAACCCCTGGAGGAAACAGTGTCGTCGTCCAGCAGTCAGGAGCCCAGCA GCTGCAGGGACTGCCCGTCTCCACTGCCGGCTGCAGCGTCCTCTGTCGCTGGAAGGGACA GATTATCACGGAAGTTCTTAGGTTCATGTGGGCAGCCGCCAGGGATTTTGCGGTCTTCGC TCAGCAGTGTGTGTGTTGGGGAACACTGGGCAGCGTCCTGAGAGCCTGTACTGTATTTTA TAATAAAGTATTTTGAAGATCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCCCCACGGTAAATAGGGCAGTTTCTTAGGCCAGCGTGAGACCTCGAGGTCGGAAGA TAACTGTCGCTGCCGCCTTGCCTTCGCCTCGTCCACGCCCGAGCCGGGTCACAGGCTCCT GAGCTCTTTCTGCTCCCCGTCGTCGGCTTCCCTCCGCGGCGCGACTCTCAGGGCCAAAAT GAGTCTGTTTGGAACAACCTCGGGTTTTGGAACCAGTGGGACTAGCATGTTTGGCAGCAC AACCACAGATAATCACAACCCTATGAAGGATATTGAAGTAACATCCTCTCCTGACGATAG CATTGGTTGTCTATCTTTTAGCCCACCCACCTTGCCGGGGAACTTTCTCATTGCAGGATC GTGGGCTAACGATGTTCGCTGCTGGGAAGTTCAGGATAGTGGACAGACTATTCCAAAAGC TCAGCAGATGCACACTGGGCCCGTGCTTGATGTCTGCTGGAGTGATGATGGGAGCAAAGT ATTTACAGCATCATGTGATAAAACTGCCAAAATGTGGGACCTCAACAGTAACCAGGCGAT ACAGATTGCACAGCATGATGCTCCTGTTAAAACCATACATTGGATCAAAGCACCAAACTA CAGCTGTGTGATGACGGGGAGCTGGGATAAGACGTTGAAGTTTTGGGATACACGGTCATC AAATCCTATGATGGTTTTGCAGCTCCCTGAAAGGTGTTACTGTGCTGACGTGATATACCC TATGGCCGTGGTGGCAACTGCAGAGAGGGGCCTGATTGTCTATCAGCTGGAGAATCAGCC CTCTGAATTCAGGTGATGTCTTTTTCCCCCCAAACTCCAGCATCGGTGTGTGGCCATTTT TAAAGACAAACAGAACAAGCCGACCGGTTTCGCCCTGGGGAGCATCGAGGGGAGAGTCGC CATTCACTACATCAACCCTCCGAACCCCGCCAAAGATAACTTCACCTTCAAGTGTCATCG CTCTAACGGGACCAACACGTCCGCTCCGCAGGACATCTACGCGGTAAACGGGATCGCATT CCATCCTGTTCACGGCACCCTTGCAACCGTGGGGTCTGATGGTAGATTCAGCTTCTGGGA CAAAGATGCCAGAACAAAACTCAAAACTTCGGAGCAGTTAGACCAGCCAATATCGGCTTG CTGCTTCAATCACAACGGAAACATATTTGCCTACGCTTCCAGCTACGACTGGTCAAAGGG ACATGAATTTTATAATCCCCAGAAGAAAAATTACATTTTCCTGCGTAACGCAGCTGAGGA GCTAAAACCCCGGAATAAGAAATAGTGGCTGGAGCCCTGTGGGTCGTCCAGAGTGTTCTC TCCACTCTGCTTCGTCTGTGTGTGAACTTGGGTCCCAGCTTCGGTGGGTTGTCAGCCATG AATGTGGATTTCAACCCCTGGAGGAAACAGTGTCGTCGTCCAGCAGTCAGGAGCCCAGCA GCTGCAGGGACTGCCCGTCTCCACTGCCGGCTGCAGCGTCCTCTGTCGCTGGAAGGGACA GATTATCACGGAAGTTCTTAGGTTCATGTGGGCAGCCGCCAGGGATTTTGCGGTCTTCGC TCAGCAGTGTGTGTGTTGGGGAACACTGGGCAGCGTCCTGAGAGCCTGTACTGTATTTTA TAATAAAGTATTTTGAAGATCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 267-1402, - strand, RNAz p=0.965212 | |
| 980-1098, - strand, RNAz p=0.880221 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-1402, - strand, RNAz p=0.965212 | |
| 980-1098, - strand, RNAz p=0.880221 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 7-172, gnl|bosTau2|chr3 (21809822-21809990) | |
| 7-172, gnl|canFam2|chr24 (45345791-45346153) | |
| 7-172, gnl|dasNov1|scaffold_61949 (10040-9669) | |
| 7-172, gnl|echTel1|scaffold_56381 (354-11) | |
| 7-172, gnl|hg17|chr20 (55359542-55359895) | |
| 7-172, gnl|Hg17|chr20 (55359722-55359886) | |
| 7-172, gnl|loxAfr1|scaffold_28566 (10123-9747) | |
| 7-172, gnl|mm7|chr2 (172744362-172744701) | |
| 7-172, gnl|panTro1|chr21 (58283907-58284260) | |
| 7-172, gnl|rheMac2|chr10 (7184430-7184079) | |
| 7-172, gnl|rn3|chr3 (163768921-163769226) | |
| 267-375, gnl|bosTau2|chr3 (21813440-21813548) | |
| 267-375, gnl|canFam2|chr24 (45349023-45349142) | |
| 267-375, gnl|danRer3|chrUn (21071005-21071118) | |
| 267-375, gnl|dasNov1|scaffold_61949 (6461-6323) | |
| 267-375, gnl|echTel1|scaffold_221174 (3712-3835) | |
| 267-375, gnl|fr1|chrUn (57725537-57725655) | |
| 267-375, gnl|galGal2|chr20 (11162817-11162694) | |
| 267-375, gnl|hg17|chr20 (55363170-55363290) | |
| 267-375, gnl|Hg17|chr20 (55363173-55363281) | |
| 267-375, gnl|loxAfr1|scaffold_149413 (5081-4961) | |
| 267-375, gnl|mm7|chr2 (172747891-172748010) | |
| 267-375, gnl|Mm7|chr2 (172747893-172748001) | |
| 267-375, gnl|monDom2|scaffold_1 (170992507-170992626) | |
| 267-375, gnl|oryCun1|scaffold_125217 (8866-8747) | |
| 267-375, gnl|panTro1|chr21 (58287540-58287660) | |
| 267-375, gnl|rheMac2|chr10 (7180795-7180675) | |
| 267-375, gnl|rn3|chr3 (163772191-163772310) | |
| 267-375, gnl|tetNig1|chr11 (1857330-1857211) | |
| 800-927, gnl|bosTau2|chr3 (21823014-21823140) | |
| 800-927, gnl|Hg17|chr20 (55381918-55382044) | |
| 800-927, gnl|Mm7|chr2 (172756368-172756494) | |
| 980-1151, gnl|bosTau2|chr18 (45953722-45953552) | |
| 980-1151, gnl|Hg17|chr20 (55383069-55383217) | |
| 980-1151, gnl|Mm7|chr18 (10469535-10469706) | |
| 1197-1640, gnl|bosTau2|chr3 (21827046-21827486) | |
| 1197-1640, gnl|Hg17|chr20 (55386474-55386916) | |
| 1197-1640, gnl|Mm7|chr2 (172759669-172760067) | |
| 1247-1463, gnl|bosTau2|chr18 (45953712-45953929) | |
| 1247-1463, gnl|Hg17|chr20 (55386524-55386744) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-172, gnl|bosTau2|chr3 (21809822-21809990) | |
| 7-172, gnl|canFam2|chr24 (45345791-45346153) | |
| 7-172, gnl|dasNov1|scaffold_61949 (10040-9669) | |
| 7-172, gnl|echTel1|scaffold_56381 (354-11) | |
| 7-172, gnl|hg17|chr20 (55359542-55359895) | |
| 7-172, gnl|Hg17|chr20 (55359722-55359886) | |
| 7-172, gnl|loxAfr1|scaffold_28566 (10123-9747) | |
| 7-172, gnl|mm7|chr2 (172744362-172744701) | |
| 7-172, gnl|panTro1|chr21 (58283907-58284260) | |
| 7-172, gnl|rheMac2|chr10 (7184430-7184079) | |
| 7-172, gnl|rn3|chr3 (163768921-163769226) | |
| 267-375, gnl|bosTau2|chr3 (21813440-21813548) | |
| 267-375, gnl|canFam2|chr24 (45349023-45349142) | |
| 267-375, gnl|danRer3|chrUn (21071005-21071118) | |
| 267-375, gnl|dasNov1|scaffold_61949 (6461-6323) | |
| 267-375, gnl|echTel1|scaffold_221174 (3712-3835) | |
| 267-375, gnl|fr1|chrUn (57725537-57725655) | |
| 267-375, gnl|galGal2|chr20 (11162817-11162694) | |
| 267-375, gnl|hg17|chr20 (55363170-55363290) | |
| 267-375, gnl|Hg17|chr20 (55363173-55363281) | |
| 267-375, gnl|loxAfr1|scaffold_149413 (5081-4961) | |
| 267-375, gnl|mm7|chr2 (172747891-172748010) | |
| 267-375, gnl|Mm7|chr2 (172747893-172748001) | |
| 267-375, gnl|monDom2|scaffold_1 (170992507-170992626) | |
| 267-375, gnl|oryCun1|scaffold_125217 (8866-8747) | |
| 267-375, gnl|panTro1|chr21 (58287540-58287660) | |
| 267-375, gnl|rheMac2|chr10 (7180795-7180675) | |
| 267-375, gnl|rn3|chr3 (163772191-163772310) | |
| 267-375, gnl|tetNig1|chr11 (1857330-1857211) | |
| 800-927, gnl|bosTau2|chr3 (21823014-21823140) | |
| 800-927, gnl|Hg17|chr20 (55381918-55382044) | |
| 800-927, gnl|Mm7|chr2 (172756368-172756494) | |
| 980-1151, gnl|bosTau2|chr18 (45953722-45953552) | |
| 980-1151, gnl|Hg17|chr20 (55383069-55383217) | |
| 980-1151, gnl|Mm7|chr18 (10469535-10469706) | |
| 1197-1640, gnl|bosTau2|chr3 (21827046-21827486) | |
| 1197-1640, gnl|Hg17|chr20 (55386474-55386916) | |
| 1197-1640, gnl|Mm7|chr2 (172759669-172760067) | |
| 1247-1463, gnl|bosTau2|chr18 (45953712-45953929) | |
| 1247-1463, gnl|Hg17|chr20 (55386524-55386744) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fce (0.543183) | |
| pro (0.512033) | |
| eye (0.341006) | |
| cut (0.339847) | |
| lun (0.300978) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| pro (0.512033) | |
| eye (0.341006) | |
| cut (0.339847) | |
| lun (0.300978) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) |