Non-Coding RNA Search

Ss1.1-Pig4-TMW8036K18.3

Sequence:


               
               CCATCAAAAGCATATATTGCTAGTGCAGGGGCTGATGCCCTTGCCAAAGTATTTGTGTGA
ATCAACAAAAACTGGCATCACAACAACAGATTTGCTTGGACACAGAGGGTCTACATCACT
GCCATTAAAACTTACTGATAAATGACACTACATGTGATCTGCCTGGTGAAGGCTATTTGG
GGCAGGCATAAATTGGTGGAAATCACATCTTAATGTCAGGCTCATTAATTTAATTGTAAT
TACTGTATTTCGTGGGACAAAAAAAGGACTCCATTATTTGTGGCCTGTACTGGATATGAA
CTGAGAGTGTCTGTCTTTTAGGTATCTTTAAGCCAATGTGGAGTCTGACCTTACAAAAAG
ACTTTTATTTTGGACTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTGCTCTTGTTGGGG
GGAAGTGAGCTCCAAGAGTAGCTTTTTTTTCATCTCTTAGTGATCTTCTGTTTATCAGTT
GAATGCCACAGATTCCCTTTTAAACTTATTTTGCTTTACAAAAAGAAAAAAAGAAAATTT
AACTTAAAATATTTTAGCATTAGTTGCACAAAATGTTTGGATAAAATTCTAGTTTTTATA
AGTCTTTTTATATATTTAGCCTGTCACAACAGTGCTCAAGATTGTATTGAGGTTTTTCTG
CATTATACAACCCTAAAACACAGAGATCTCACTGACCCGCTGCCGTGTAACCACACTTTT
TCTTTCTTTTGCCTAATACAGCTCAGCTAAGTCCTTCCATAAAGATGCTAAATCACCTTC
ATCATCACATAATTGTCTTCATAAACCAAGGACTATTAAGTGTATTAAAATGAAACGGTG
GGGTTTAGTACTCCAAATGAACTCTTAAAAAAGAAAAAAAAAACTAATCTCGGCATCCTA
TCACTATGTGATATTTTGTACATCTTACTGTATTTACAAGTTTATTTATCAAGGATTATC
CATCTTGCTAATAGCCTATTATTTATTTCACTTTTTGTTGGTCTTTATATCCTTTTATTA
ATGTGCTAAAGGAACCTGTATATCTATTTTGGAACTCTTTGAATAGTCTAAAATAGACTA
AAAATGGAGTATTTTATAGTTTAAGTTACAAACCAAGGTGATTCCCCCCTCCCCAGATAC
ATATCTTGTTTTACCATGATTCCAAACAAAACTATCTTGTTTTAAAATATTTGGAGTAAA
ATTTTATTTGCATTACAAATAGGATACAAAATAGTTGAATCAGGATACAGAAATCTGCTG
TGTTTGGACTAGTTATCCCTGTTTTATTTTTTCAGATGTGCTTAATTTTATGGTGTAACT
AAAGATTTTGTTTGTGTAATGCATGATTAAGACAATAAAGTATTTTTTCTAGTCTTCCAA
AAAACTTTTCTGATCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGTTTTACAAA
CTATGAATCAGCAAATTTTTAAGATTGTACCACATAGCGAACGTACAGCTGTTGAAAAAT
AATGTATATAAAATGCATATAATAAATATTAAATTGTGTACCTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCAAAAGCATATATTGCTAGTGCAGGGGCTGATGCCCTTGCCAAAGTATTTGTGTGA
ATCAACAAAAACTGGCATCACAACAACAGATTTGCTTGGACACAGAGGGTCTACATCACT
GCCATTAAAACTTACTGATAAATGACACTACATGTGATCTGCCTGGTGAAGGCTATTTGG
GGCAGGCATAAATTGGTGGAAATCACATCTTAATGTCAGGCTCATTAATTTAATTGTAAT
TACTGTATTTCGTGGGACAAAAAAAGGACTCCATTATTTGTGGCCTGTACTGGATATGAA
CTGAGAGTGTCTGTCTTTTAGGTATCTTTAAGCCAATGTGGAGTCTGACCTTACAAAAAG
ACTTTTATTTTGGACTCTGTGTGCTGCCTTAGGGTTAGGAATGTGGTGCTCTTGTTGGGG
GGAAGTGAGCTCCAAGAGTAGCTTTTTTTTCATCTCTTAGTGATCTTCTGTTTATCAGTT
GAATGCCACAGATTCCCTTTTAAACTTATTTTGCTTTACAAAAAGAAAAAAAGAAAATTT
AACTTAAAATATTTTAGCATTAGTTGCACAAAATGTTTGGATAAAATTCTAGTTTTTATA
AGTCTTTTTATATATTTAGCCTGTCACAACAGTGCTCAAGATTGTATTGAGGTTTTTCTG
CATTATACAACCCTAAAACACAGAGATCTCACTGACCCGCTGCCGTGTAACCACACTTTT
TCTTTCTTTTGCCTAATACAGCTCAGCTAAGTCCTTCCATAAAGATGCTAAATCACCTTC
ATCATCACATAATTGTCTTCATAAACCAAGGACTATTAAGTGTATTAAAATGAAACGGTG
GGGTTTAGTACTCCAAATGAACTCTTAAAAAAGAAAAAAAAAACTAATCTCGGCATCCTA
TCACTATGTGATATTTTGTACATCTTACTGTATTTACAAGTTTATTTATCAAGGATTATC
CATCTTGCTAATAGCCTATTATTTATTTCACTTTTTGTTGGTCTTTATATCCTTTTATTA
ATGTGCTAAAGGAACCTGTATATCTATTTTGGAACTCTTTGAATAGTCTAAAATAGACTA
AAAATGGAGTATTTTATAGTTTAAGTTACAAACCAAGGTGATTCCCCCCTCCCCAGATAC
ATATCTTGTTTTACCATGATTCCAAACAAAACTATCTTGTTTTAAAATATTTGGAGTAAA
ATTTTATTTGCATTACAAATAGGATACAAAATAGTTGAATCAGGATACAGAAATCTGCTG
TGTTTGGACTAGTTATCCCTGTTTTATTTTTTCAGATGTGCTTAATTTTATGGTGTAACT
AAAGATTTTGTTTGTGTAATGCATGATTAAGACAATAAAGTATTTTTTCTAGTCTTCCAA
AAAACTTTTCTGATCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGTTTTACAAA
CTATGAATCAGCAAATTTTTAAGATTGTACCACATAGCGAACGTACAGCTGTTGAAAAAT
AATGTATATAAAATGCATATAATAAATATTAAATTGTGTACCTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-233, + strand, RNAz p=0.93746
               

               
               717-950, - strand, RNAz p=0.590619
               

               
               1031-1150, - strand, RNAz p=0.664083

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-233, + strand, RNAz p=0.93746
               

               
               717-950, - strand, RNAz p=0.590619
               

               
               1031-1150, - strand, RNAz p=0.664083

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               135-270, - strand, RNAmicro p=0.999666

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               135-270, - strand, RNAmicro p=0.999666

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_014574, +
               

               
               3' of BC007230, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014574, +
               

               
               3' of BC007230, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1544, gnl|bosTau2|chr21 (26171213-26169675)
               

               
               1-1544, gnl|Hg17|chr14 (30434427-30432842)
               

               
               1-1544, gnl|Mm7|chr12 (49623014-49621473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1544, gnl|bosTau2|chr21 (26171213-26169675)
               

               
               1-1544, gnl|Hg17|chr14 (30434427-30432842)
               

               
               1-1544, gnl|Mm7|chr12 (49623014-49621473)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               bfe (0.899146)
               

               
               eye (0.511509)
               

               
               fco (0.471624)
               

               
               tra (0.369276)
               

               
               lun (0.300978)
               

               
               ret (0.257467)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.899146)
               

               
               eye (0.511509)
               

               
               fco (0.471624)
               

               
               tra (0.369276)
               

               
               lun (0.300978)
               

               
               ret (0.257467)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-233, + strand, RNAz p=0.93746
	717-950, - strand, RNAz p=0.590619
	1031-1150, - strand, RNAz p=0.664083

	1-1544, gnl\|bosTau2\|chr21 (26171213-26169675)
	1-1544, gnl\|Hg17\|chr14 (30434427-30432842)
	1-1544, gnl\|Mm7\|chr12 (49623014-49621473)

	bfe (0.899146)
	eye (0.511509)
	fco (0.471624)
	tra (0.369276)
	lun (0.300978)
	ret (0.257467)
	jca (0.22792)
	tes (0.207814)
	aor (0.195274)
	ldo (0.194005)
	sin (0.174948)
	fhi (0.169578)
	nco (0.161734)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	ste (0.135208)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	ecc (0.115035)
	nbm (0.0993246)