Non-Coding RNA Search

Ss1.1-Pig4-TMW8036K19.3

Sequence:


               
               GCTGAATTGGTTGGTGATCATTACATTCAGGGATCCACAGAAGAAAGGAATTGACTTGGG
GCCTTTGGCCACGTCAAAAGAAGAGGCACCACTGTTAGTCCCCATTGGATTATCAAGGAA
GGGAATCCATGTTCACACATGAGCACTTAATGCTCAGTATTACATGTAACCTGATGAGTA
GCGTATCGATAGAGACGCAGGTGACACAGGAGGTAGAAAAAGCAATTCAGTTCCCCCTTC
TGCCCTTTGCATTGCCTAACACTGGTTCCATTGTGTTCTCTCACTAGCTGCCCAGGCAAC
ATTATTATGTTAATATCAGCAAACCCAATGTCATTAAGTCTAAGTGTCCCGCAAAGAATG
TGTATCTAATGAACTCTTTCATCTGATGGCCCGTGGGGTGATTGACACCCTGGACTGGCA
TCTCAGGTGGACACCTACTCTAGCACCTGGCGCTCAGGAGCTGAATTACTAAAAGCAAAT
CTGTGTCTTCCTTAAGGAAGGTGCCAAACAAATAACCAGTGAAGCAAAGCCTCGTCTGGG
TTTGTGTTTCCGAGAGTGAAAACATCCTTGTAATGACTATTTATTTCATTAAATAGTTGA
ACATGAATAGAAAGGGAAACCGTTCTCATTGAGCCTTATTTTGGCTAAATCCTACATTTG
TAGGGGAATGTACCACAGAGCCCAGCCCTCCACTTGAAGAGTGGCTCTGATCTCCATAGT
GGGAACCATGCAGGAATTACACAATTCCACACTCAGTAGCCTTCCCGGCTCTCTGTGCTC
ACATTGCACATTTTTAAAACAATGGATGGATGGATGGATGGATGGATGGATGAATGGATG
GATGGATGAATGAGACATGTACTACTGATTATTTTATTCCCGAGTTCTCAAAATATTTTT
TGTGCATATTTTGAGTGCTTACTGTAATTACTTTGAAATGTACTTTGATTAGAAAAGAAA
ATGGAAATGATGCTGCTGAAAAATTTCTAATAAATGTGTATTTTATCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAATTGGTTGGTGATCATTACATTCAGGGATCCACAGAAGAAAGGAATTGACTTGGG
GCCTTTGGCCACGTCAAAAGAAGAGGCACCACTGTTAGTCCCCATTGGATTATCAAGGAA
GGGAATCCATGTTCACACATGAGCACTTAATGCTCAGTATTACATGTAACCTGATGAGTA
GCGTATCGATAGAGACGCAGGTGACACAGGAGGTAGAAAAAGCAATTCAGTTCCCCCTTC
TGCCCTTTGCATTGCCTAACACTGGTTCCATTGTGTTCTCTCACTAGCTGCCCAGGCAAC
ATTATTATGTTAATATCAGCAAACCCAATGTCATTAAGTCTAAGTGTCCCGCAAAGAATG
TGTATCTAATGAACTCTTTCATCTGATGGCCCGTGGGGTGATTGACACCCTGGACTGGCA
TCTCAGGTGGACACCTACTCTAGCACCTGGCGCTCAGGAGCTGAATTACTAAAAGCAAAT
CTGTGTCTTCCTTAAGGAAGGTGCCAAACAAATAACCAGTGAAGCAAAGCCTCGTCTGGG
TTTGTGTTTCCGAGAGTGAAAACATCCTTGTAATGACTATTTATTTCATTAAATAGTTGA
ACATGAATAGAAAGGGAAACCGTTCTCATTGAGCCTTATTTTGGCTAAATCCTACATTTG
TAGGGGAATGTACCACAGAGCCCAGCCCTCCACTTGAAGAGTGGCTCTGATCTCCATAGT
GGGAACCATGCAGGAATTACACAATTCCACACTCAGTAGCCTTCCCGGCTCTCTGTGCTC
ACATTGCACATTTTTAAAACAATGGATGGATGGATGGATGGATGGATGGATGAATGGATG
GATGGATGAATGAGACATGTACTACTGATTATTTTATTCCCGAGTTCTCAAAATATTTTT
TGTGCATATTTTGAGTGCTTACTGTAATTACTTTGAAATGTACTTTGATTAGAAAAGAAA
ATGGAAATGATGCTGCTGAAAAATTTCTAATAAATGTGTATTTTATCAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr2 (18747898-18748908)
               

               
               1-1008, gnl|Hg17|chr2 (169810371-169809128)
               

               
               1-1008, gnl|Mm7|chr2 (69355892-69354888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr2 (18747898-18748908)
               

               
               1-1008, gnl|Hg17|chr2 (169810371-169809128)
               

               
               1-1008, gnl|Mm7|chr2 (69355892-69354888)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               kid (0.518941)
               

               
               cki (0.330469)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               cki (0.330469)

	1-1008, gnl\|bosTau2\|chr2 (18747898-18748908)
	1-1008, gnl\|Hg17\|chr2 (169810371-169809128)
	1-1008, gnl\|Mm7\|chr2 (69355892-69354888)