Non-Coding RNA Search

Ss1.1-Pig4-TMW8036K21.5

Sequence:


               
               CGGGCTGGCGCAACCGTGGGGCAAGACTCTGCAGCCTAGTGCCACAGGCGACTGGGTCCA
CCCATCACACCCGCCCTGCTTCAGCTTCCTTACACCCTCCAGAGTCCCCAGCACTCCTCA
GCCTCTCCTCAGACCTGTCAAGAGGGAGGAAGGGCCCCTGACAGTTCCTGTGGTGACCTT
GCTGGCCTGCTACGCTTGTAACTATGCTGTGCTGAGTGTTGACAACTCATCCAAAGTCAG
GGAAATGGTTTGTTGAACTTCAAAGCAACTGTGAATTCATCCTGGAGGGATAGTGGAGAC
CAAGTGTGACAGATCATAGGGTGAGGGCCACTCCCACTCCCTCCAGAGAGGGCCTGGAGT
CACTGTGACCCCAACTTGAGACTCATGACACCGCTCCAGTTTTGCCTGGCAAGTGGGGCC
GATGTTCCCAGAGCAGAAGACCTCTGCCCATCTCCCCTGGTCACTCGCTCATGCTCTTTT
CCTTTTCTCTCCATCCAGTCTTGATCTCTTGACTTAGAGGCCCTCAAGATGTGACCCACA
TCAACTCTGGCCAAAGTCCAAACCCAAACATGACTGCATAACAGAGCTGTGCCATTTGCC
TTTACACCTCATCATGGCCACATCTCAGGGAACCCCAGCAGGGCCTCATTCCTGCAGGGG
GCAAGGCCCCTGCCCAAGCCCTGCAGTCACCCATGCATCTCGCACTTATGGAACTTTCCA
CTGCAAACACACCTCTGGGAAATGGCTCCACTCAACAGGAGGGGATGGGGGAAGGAAGCA
AACTCTTCAGCGCACCCTTTGACATGAACTAAGTTTCCTGCTTTGGGAAAGGCTCCCCCC
ACAATTCAGGGGACTGTAGATAACACTGACTTTTTGCTTTTAACTAATAACTACTTTCTC
ACTTTTTTAACTAATAATACTTACACATTTCTAGCTCTCACAAATAGAATAAGGATTTTT
TGCATAATGAGCTGGTTGCTATTTAGGTTAACAACTTAAATTCAGGTTTTTTTAGTTGGA
TAAACCAATTCCTATAACCTTCTATTTCCTATCATTGTGGTAATTGCTTTAATGATAATG
ACTATATATATATTGGCTGCACGAATGCATGGGACATACTGTATTTTTTTTATAATTAAG
TAAATAAAAATCTTGAAATATTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGGCGCAACCGTGGGGCAAGACTCTGCAGCCTAGTGCCACAGGCGACTGGGTCCA
CCCATCACACCCGCCCTGCTTCAGCTTCCTTACACCCTCCAGAGTCCCCAGCACTCCTCA
GCCTCTCCTCAGACCTGTCAAGAGGGAGGAAGGGCCCCTGACAGTTCCTGTGGTGACCTT
GCTGGCCTGCTACGCTTGTAACTATGCTGTGCTGAGTGTTGACAACTCATCCAAAGTCAG
GGAAATGGTTTGTTGAACTTCAAAGCAACTGTGAATTCATCCTGGAGGGATAGTGGAGAC
CAAGTGTGACAGATCATAGGGTGAGGGCCACTCCCACTCCCTCCAGAGAGGGCCTGGAGT
CACTGTGACCCCAACTTGAGACTCATGACACCGCTCCAGTTTTGCCTGGCAAGTGGGGCC
GATGTTCCCAGAGCAGAAGACCTCTGCCCATCTCCCCTGGTCACTCGCTCATGCTCTTTT
CCTTTTCTCTCCATCCAGTCTTGATCTCTTGACTTAGAGGCCCTCAAGATGTGACCCACA
TCAACTCTGGCCAAAGTCCAAACCCAAACATGACTGCATAACAGAGCTGTGCCATTTGCC
TTTACACCTCATCATGGCCACATCTCAGGGAACCCCAGCAGGGCCTCATTCCTGCAGGGG
GCAAGGCCCCTGCCCAAGCCCTGCAGTCACCCATGCATCTCGCACTTATGGAACTTTCCA
CTGCAAACACACCTCTGGGAAATGGCTCCACTCAACAGGAGGGGATGGGGGAAGGAAGCA
AACTCTTCAGCGCACCCTTTGACATGAACTAAGTTTCCTGCTTTGGGAAAGGCTCCCCCC
ACAATTCAGGGGACTGTAGATAACACTGACTTTTTGCTTTTAACTAATAACTACTTTCTC
ACTTTTTTAACTAATAATACTTACACATTTCTAGCTCTCACAAATAGAATAAGGATTTTT
TGCATAATGAGCTGGTTGCTATTTAGGTTAACAACTTAAATTCAGGTTTTTTTAGTTGGA
TAAACCAATTCCTATAACCTTCTATTTCCTATCATTGTGGTAATTGCTTTAATGATAATG
ACTATATATATATTGGCTGCACGAATGCATGGGACATACTGTATTTTTTTTATAATTAAG
TAAATAAAAATCTTGAAATATTTCAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               13-538, gnl|bosTau2|chr18 (29744071-29744625)
               

               
               13-538, gnl|Hg17|chr16 (64995012-64995599)
               


               
               569-1160, gnl|bosTau2|chr18 (29744624-29745233)
               

               
               569-1160, gnl|Hg17|chr16 (64995598-64996176)
               

               
               569-1160, gnl|Mm7|chr8 (102744403-102745004)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-538, gnl|bosTau2|chr18 (29744071-29744625)
               

               
               13-538, gnl|Hg17|chr16 (64995012-64995599)
               


               
               569-1160, gnl|bosTau2|chr18 (29744624-29745233)
               

               
               569-1160, gnl|Hg17|chr16 (64995598-64996176)
               

               
               569-1160, gnl|Mm7|chr8 (102744403-102745004)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               mas (0.630915)
               

               
               ton (0.351)
               

               
               isp (0.300752)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               clu (0.119646)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               ton (0.351)
               

               
               isp (0.300752)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               clu (0.119646)

	13-538, gnl\|bosTau2\|chr18 (29744071-29744625)
	13-538, gnl\|Hg17\|chr16 (64995012-64995599)

	569-1160, gnl\|bosTau2\|chr18 (29744624-29745233)
	569-1160, gnl\|Hg17\|chr16 (64995598-64996176)
	569-1160, gnl\|Mm7\|chr8 (102744403-102745004)

	mas (0.630915)
	ton (0.351)
	isp (0.300752)
	ssp (0.271039)
	cov (0.264306)
	ece (0.229305)
	cmu (0.186393)
	mgm (0.180343)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	liv (0.146284)
	hlv (0.139256)
	che (0.136314)
	nmm (0.132802)
	ova (0.129132)
	clu (0.119646)