Ss1.1-Pig4-TMW8036L07.5
|
CCGCCGCCGCCGCTCTGCACGCTGCCGCCGGGCCCTGGACCCCCGCGCTTCGTGTGCTAC
TGCGAGGGGGAGGGAAGTGGGGCCGGGGGACGTGGCGGTTTCAACCTCTATGTGACGGAC
GCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTCAAAGCCCGT
TTTGGCCTGAGTGCGGCTGAAGACATCACCCCCCGCTTCAGGGCAGCCTGTGAGCAGCAA
GCTGTGACTCTCACCTTCCAGGACGACAGGGCATCCCTGACCCTCTCTGGGGGGCCCTCA
CCGCTGGACTTTGACCTCTCCAAGGTGCCTGGCCCGGAGGCAGCCTCCAGGTTGCGGGCA
CTGACACTGGGCCTGGCAGAGCGCCTGTGCAGCTTGGAGCGGCAGCTGGCAGCTGCGGAG
GAGGAGACATCCACCAGCCCCCGCAAGAGCCCCTGGCAGGTGGGCTCTCAGCACTTCTTG
CCAGACCTGGATCCTCAGAGAGGTGGCCCTGGACCTGGGGTCAAGAGACGGTGCCCAGGA
GAGTCTCTCATCAACCCCGGCTTCAAGAGGAAGAAACCCGCTGGTGGTGTAGACTTCGAT
GACCCCTGAAAGTGCAGCAAAGAGTGCGGTCATGGCCCTCAGGAGTCTGTCCATGAGAGG
AGGGGCAGCCCCTGAGGCCCTGCCACGGGCGCCTGCCCATCCTGCTGCCCAGCACGAAAA
CACCTGCTCCCCCAGCCCCTTCCCCAGCAAATAAACATCTTTATCTGGCCGAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCCGCCGCCGCTCTGCACGCTGCCGCCGGGCCCTGGACCCCCGCGCTTCGTGTGCTAC
TGCGAGGGGGAGGGAAGTGGGGCCGGGGGACGTGGCGGTTTCAACCTCTATGTGACGGAC
GCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTCAAAGCCCGT
TTTGGCCTGAGTGCGGCTGAAGACATCACCCCCCGCTTCAGGGCAGCCTGTGAGCAGCAA
GCTGTGACTCTCACCTTCCAGGACGACAGGGCATCCCTGACCCTCTCTGGGGGGCCCTCA
CCGCTGGACTTTGACCTCTCCAAGGTGCCTGGCCCGGAGGCAGCCTCCAGGTTGCGGGCA
CTGACACTGGGCCTGGCAGAGCGCCTGTGCAGCTTGGAGCGGCAGCTGGCAGCTGCGGAG
GAGGAGACATCCACCAGCCCCCGCAAGAGCCCCTGGCAGGTGGGCTCTCAGCACTTCTTG
CCAGACCTGGATCCTCAGAGAGGTGGCCCTGGACCTGGGGTCAAGAGACGGTGCCCAGGA
GAGTCTCTCATCAACCCCGGCTTCAAGAGGAAGAAACCCGCTGGTGGTGTAGACTTCGAT
GACCCCTGAAAGTGCAGCAAAGAGTGCGGTCATGGCCCTCAGGAGTCTGTCCATGAGAGG
AGGGGCAGCCCCTGAGGCCCTGCCACGGGCGCCTGCCCATCCTGCTGCCCAGCACGAAAA
CACCTGCTCCCCCAGCCCCTTCCCCAGCAAATAAACATCTTTATCTGGCCGAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-131, gnl|bosTau2|chr11 (86322261-86322392) |
|
3-131, gnl|canFam2|chr9 (51972418-51972168) |
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3-131, gnl|echTel1|scaffold_242792 (772-1032) |
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3-131, gnl|hg17|chr9 (137162623-137162875) |
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3-131, gnl|Hg17|chr9 (137162744-137162873) |
|
3-131, gnl|mm7|chr2 (25468297-25468079) |
|
3-131, gnl|Mm7|chr2 (25468205-25468074) |
|
3-131, gnl|monDom2|scaffold_1 (188298274-188298034) |
|
3-131, gnl|rheMac2|chr15 (1266404-1266152) |
|
3-131, gnl|rn3|chr3 (3627057-3626839) |
| |
|
219-435, gnl|bosTau2|chr11 (86322850-86323065) |
|
219-435, gnl|Hg17|chr9 (137163339-137163556) |
|
219-435, gnl|Mm7|chr2 (25467671-25467448) |
| |
|
568-774, gnl|bosTau2|chr11 (86323537-86323738) |
|
568-774, gnl|Hg17|chr9 (137164053-137164266) |
|
568-774, gnl|Mm7|chr2 (25467014-25466806) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-131, gnl|bosTau2|chr11 (86322261-86322392) |
|
3-131, gnl|canFam2|chr9 (51972418-51972168) |
|
3-131, gnl|echTel1|scaffold_242792 (772-1032) |
|
3-131, gnl|hg17|chr9 (137162623-137162875) |
|
3-131, gnl|Hg17|chr9 (137162744-137162873) |
|
3-131, gnl|mm7|chr2 (25468297-25468079) |
|
3-131, gnl|Mm7|chr2 (25468205-25468074) |
|
3-131, gnl|monDom2|scaffold_1 (188298274-188298034) |
|
3-131, gnl|rheMac2|chr15 (1266404-1266152) |
|
3-131, gnl|rn3|chr3 (3627057-3626839) |
| |
|
219-435, gnl|bosTau2|chr11 (86322850-86323065) |
|
219-435, gnl|Hg17|chr9 (137163339-137163556) |
|
219-435, gnl|Mm7|chr2 (25467671-25467448) |
| |
|
568-774, gnl|bosTau2|chr11 (86323537-86323738) |
|
568-774, gnl|Hg17|chr9 (137164053-137164266) |
|
568-774, gnl|Mm7|chr2 (25467014-25466806) |
|
cli (0.458435) |
|
nms (0.213858) |
|
col (0.195008) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
nbm (0.0993246) |
|
cli (0.458435) |
|
nms (0.213858) |
|
col (0.195008) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
eru (0.120048) |
|
nbm (0.0993246) |
