Non-Coding RNA Search

Ss1.1-Pig4-TMW8036L08.5

Sequence:


               
               TTTTTGACAAGGCAGCTGTGTTTGAGGAGATTGATACCTATGAGAGGAGGAGTGGTAGCC
GTTCCCGGGGCATCCCAAATGAGAGACCTACTCGGTACCGCCACGATGAGAACATCCTGG
AGTCAGAGCCCATTGTCTACCGACGGATCACAGTGCCCCACAATGTAAGCAAGGAGTTCT
GCACAGACTCTGGCCTGGTTGTCCCAAGTGTTTCCTATGAGTTGCATAAAAAGCTGTTGT
CTGTGGCTGAGAAACATGGCTTGACCCTGGAACGGAGACTGGAGATGACAGGTGTGTGTG
CCAGCCAGATGGCACTGACCCTGCTTGGAGGACCCAACAGATTGAATCCCAAAAATATTC
ACCAGAGGCCTACAGTGGCCCTGCTATGTGGGCCCCATGTGAAGGGGGCTCATGGTATCA
GCTGTGGAAGGCATCTAGCTAACCATGATGTCCAGGTCATCCTCTTCCTTCCCAACTTCA
TGAAGATGCTGGAATCCATCACCAACGAGCTGTCTCTCTTCAGCAAGACCCAAGGCCAAC
AAGTATCTAGCCTCAAAGATCTGCCCACTAGCCCTGTGGACCTGGTGATCAACTGCCTGG
ATTGCCCCGAGAATGCCTTCCTGCGGGATCAGCCCTGGTACAAGGCAGCTGTGGCCTGGG
CCAACCAGAACCGAGCGCCAGTACTCAGCATAGACCCTCCTGTGCATGAAGTTGAACAGG
GCATCGATGCCAAGTGGTCGCTGGCTCTGGGCCTGCCTCTGCCTTTAGGGGAGCATGCCG
GCCGCGTCTATCTGTGCGACATCGGCATTCCCCAGCAGGTGTTCCAGGAGGTGGGCATCA
ACTACCACTCGCCCTTTGGCTGCAAGTTTGTCATCCCACTGCACTCCGCCTAGAAGGGCT
CTAGGCAGGCTGGACCTTGCGGTCCCCCCGCTGCTCCTGATACTGAACTTGACAACGAAC
GCCTTAAGGATGTGAAACTTCATGGACCTTGTTCAATTTTTTCGTTTGCATTTGTTTCTT
TGAGAGAACAGATGGTATTTAAAACTGACCTGTCACCTGCCCTTAGCCAGGGAAGGCCTC
CCCACTGGGTGTGCGGGGCAGGTGGCAGGCTGAGTGGATGGTGGGTCCAGGGATCCATAC
ACTCAGCCCCCGTGTGGTCAGATGGGGCTTTGTTTACAGACATAGGCAGCTCACAGACTG
TGTTTCAGGTTTACAGCCACTGGACCTGGACGAGCGCCTCATGGGGTGGGGCAGTTCTGT
TTAGGGGCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGACAAGGCAGCTGTGTTTGAGGAGATTGATACCTATGAGAGGAGGAGTGGTAGCC
GTTCCCGGGGCATCCCAAATGAGAGACCTACTCGGTACCGCCACGATGAGAACATCCTGG
AGTCAGAGCCCATTGTCTACCGACGGATCACAGTGCCCCACAATGTAAGCAAGGAGTTCT
GCACAGACTCTGGCCTGGTTGTCCCAAGTGTTTCCTATGAGTTGCATAAAAAGCTGTTGT
CTGTGGCTGAGAAACATGGCTTGACCCTGGAACGGAGACTGGAGATGACAGGTGTGTGTG
CCAGCCAGATGGCACTGACCCTGCTTGGAGGACCCAACAGATTGAATCCCAAAAATATTC
ACCAGAGGCCTACAGTGGCCCTGCTATGTGGGCCCCATGTGAAGGGGGCTCATGGTATCA
GCTGTGGAAGGCATCTAGCTAACCATGATGTCCAGGTCATCCTCTTCCTTCCCAACTTCA
TGAAGATGCTGGAATCCATCACCAACGAGCTGTCTCTCTTCAGCAAGACCCAAGGCCAAC
AAGTATCTAGCCTCAAAGATCTGCCCACTAGCCCTGTGGACCTGGTGATCAACTGCCTGG
ATTGCCCCGAGAATGCCTTCCTGCGGGATCAGCCCTGGTACAAGGCAGCTGTGGCCTGGG
CCAACCAGAACCGAGCGCCAGTACTCAGCATAGACCCTCCTGTGCATGAAGTTGAACAGG
GCATCGATGCCAAGTGGTCGCTGGCTCTGGGCCTGCCTCTGCCTTTAGGGGAGCATGCCG
GCCGCGTCTATCTGTGCGACATCGGCATTCCCCAGCAGGTGTTCCAGGAGGTGGGCATCA
ACTACCACTCGCCCTTTGGCTGCAAGTTTGTCATCCCACTGCACTCCGCCTAGAAGGGCT
CTAGGCAGGCTGGACCTTGCGGTCCCCCCGCTGCTCCTGATACTGAACTTGACAACGAAC
GCCTTAAGGATGTGAAACTTCATGGACCTTGTTCAATTTTTTCGTTTGCATTTGTTTCTT
TGAGAGAACAGATGGTATTTAAAACTGACCTGTCACCTGCCCTTAGCCAGGGAAGGCCTC
CCCACTGGGTGTGCGGGGCAGGTGGCAGGCTGAGTGGATGGTGGGTCCAGGGATCCATAC
ACTCAGCCCCCGTGTGGTCAGATGGGGCTTTGTTTACAGACATAGGCAGCTCACAGACTG
TGTTTCAGGTTTACAGCCACTGGACCTGGACGAGCGCCTCATGGGGTGGGGCAGTTCTGT
TTAGGGGCCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62653745|ref|XP_236291.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62653745|ref|XP_236291.3|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               636-795, - strand, RNAz p=0.972491
               

               
               836-955, - strand, RNAz p=0.69785
               

               
               994-1146, + strand, RNAz p=0.999363

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               636-795, - strand, RNAz p=0.972491
               

               
               836-955, - strand, RNAz p=0.69785
               

               
               994-1146, + strand, RNAz p=0.999363

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-186, gnl|bosTau2|chr21 (22841113-22840928)
               

               
               1-186, gnl|canFam2|chr30 (40741385-40741738)
               

               
               1-186, gnl|danRer3|chr25 (10767209-10766860)
               

               
               1-186, gnl|dasNov1|scaffold_88875 (7050-7344)
               

               
               1-186, gnl|echTel1|scaffold_315148 (485-835)
               

               
               1-186, gnl|fr1|chrUn (37965647-37965997)
               

               
               1-186, gnl|galGal2|chr10 (30643-30294)
               

               
               1-186, gnl|hg17|chr15 (72735109-72735463)
               

               
               1-186, gnl|Hg17|chr15 (72735312-72735127)
               

               
               1-186, gnl|loxAfr1|scaffold_23575 (39297-39651)
               

               
               1-186, gnl|mm7|chr9 (57755207-57754853)
               

               
               1-186, gnl|Mm7|chr9 (57755002-57755187)
               

               
               1-186, gnl|monDom2|scaffold_41 (2898180-2897839)
               

               
               1-186, gnl|oryCun1|scaffold_176678 (51082-50728)
               

               
               1-186, gnl|panTro1|chr16_random (21865687-21866041)
               

               
               1-186, gnl|rheMac2|chr7 (53456770-53457124)
               

               
               1-186, gnl|tetNig1|chr13 (10508096-10508441)
               

               
               1-186, gnl|xenTro1|scaffold_295 (3822-3473)
               


               
               557-1272, gnl|bosTau2|chr21 (22821423-22820704)
               

               
               557-1272, gnl|Hg17|chr15 (72712342-72711632)
               

               
               557-1272, gnl|Mm7|chr9 (57775825-57776526)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr21 (22841113-22840928)
               

               
               1-186, gnl|canFam2|chr30 (40741385-40741738)
               

               
               1-186, gnl|danRer3|chr25 (10767209-10766860)
               

               
               1-186, gnl|dasNov1|scaffold_88875 (7050-7344)
               

               
               1-186, gnl|echTel1|scaffold_315148 (485-835)
               

               
               1-186, gnl|fr1|chrUn (37965647-37965997)
               

               
               1-186, gnl|galGal2|chr10 (30643-30294)
               

               
               1-186, gnl|hg17|chr15 (72735109-72735463)
               

               
               1-186, gnl|Hg17|chr15 (72735312-72735127)
               

               
               1-186, gnl|loxAfr1|scaffold_23575 (39297-39651)
               

               
               1-186, gnl|mm7|chr9 (57755207-57754853)
               

               
               1-186, gnl|Mm7|chr9 (57755002-57755187)
               

               
               1-186, gnl|monDom2|scaffold_41 (2898180-2897839)
               

               
               1-186, gnl|oryCun1|scaffold_176678 (51082-50728)
               

               
               1-186, gnl|panTro1|chr16_random (21865687-21866041)
               

               
               1-186, gnl|rheMac2|chr7 (53456770-53457124)
               

               
               1-186, gnl|tetNig1|chr13 (10508096-10508441)
               

               
               1-186, gnl|xenTro1|scaffold_295 (3822-3473)
               


               
               557-1272, gnl|bosTau2|chr21 (22821423-22820704)
               

               
               557-1272, gnl|Hg17|chr15 (72712342-72711632)
               

               
               557-1272, gnl|Mm7|chr9 (57775825-57776526)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	636-795, - strand, RNAz p=0.972491
	836-955, - strand, RNAz p=0.69785
	994-1146, + strand, RNAz p=0.999363

	1-186, gnl\|bosTau2\|chr21 (22841113-22840928)
	1-186, gnl\|canFam2\|chr30 (40741385-40741738)
	1-186, gnl\|danRer3\|chr25 (10767209-10766860)
	1-186, gnl\|dasNov1\|scaffold_88875 (7050-7344)
	1-186, gnl\|echTel1\|scaffold_315148 (485-835)
	1-186, gnl\|fr1\|chrUn (37965647-37965997)
	1-186, gnl\|galGal2\|chr10 (30643-30294)
	1-186, gnl\|hg17\|chr15 (72735109-72735463)
	1-186, gnl\|Hg17\|chr15 (72735312-72735127)
	1-186, gnl\|loxAfr1\|scaffold_23575 (39297-39651)
	1-186, gnl\|mm7\|chr9 (57755207-57754853)
	1-186, gnl\|Mm7\|chr9 (57755002-57755187)
	1-186, gnl\|monDom2\|scaffold_41 (2898180-2897839)
	1-186, gnl\|oryCun1\|scaffold_176678 (51082-50728)
	1-186, gnl\|panTro1\|chr16_random (21865687-21866041)
	1-186, gnl\|rheMac2\|chr7 (53456770-53457124)
	1-186, gnl\|tetNig1\|chr13 (10508096-10508441)
	1-186, gnl\|xenTro1\|scaffold_295 (3822-3473)

	557-1272, gnl\|bosTau2\|chr21 (22821423-22820704)
	557-1272, gnl\|Hg17\|chr15 (72712342-72711632)
	557-1272, gnl\|Mm7\|chr9 (57775825-57776526)