Ss1.1-Pig4-TMW8036L10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTAGTCGGGGGTGGTGGGAGAAGGAGGAGGAGGCGGCGGCGAATCACTTATAAATGG CGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTTCATG GGCCTCTTCTTTATGAAGCAAAGTGTGTAAAGGTTGCCATAAAGGATAAACAAGTGAAAT ACTTTATACATTACAGTGGTTGGAATAAAAATTGGGATGAATGGGTTCCAGAAAGCAGAG TACTCAAATACGTGGACACCAATCTGCAGAAACAACGAGAACTTCAAAAAGCCAATCAGG AGCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCCCCTGGAAAGAAGACATCTGGTCTGC AACAGAAAAACGTTGAAGTGAAAACAAAAAAGAACAAGCAGAAAACACCTGGAAATGGAG AAGGTGGGAGTACCAGTGAGACACCTCAGCCTCCTCGCAAGAAAAGGGCCCGAGTAGATC CAACTGTTGAAAATGAGGAAACATTCATGAACAGAGTTGAAGTTAAAGTAAAGATTCCTG AAGAACTCAAACCATGGCTTGTTGATGACTGGGACTTAATCACCCGGCAAAAACAGCTGT TTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTAGAGGATTATGCAAATTACAAAA AGTCTCGAGGAAACACAGATAATAAGGAGTATGCTGTTAATGAAGTTGTGGCAGGGATAA AGGAATACTTCAATGTAATGTTGGGCACTCAGCTACTCTACAAGTTTGAGAGACCACAGT ATGCTGAAATTCTCGCCGATCACCCCGATGCGCCCATGTCCCAGGTGTATGGAGCACCAC ATCTACTGAGATTATTTGTACGAATTGGAGCAATGTTGGCCTATACACCTCTGGATGAGA AGAGCCTTGCTTTATTACTGAATTATCTTCACGATTTCCTAAAATACCTGGCAAAGAACT CTGCAACTTTGTTTAGTGCCAGCGATTATGAAGTTGCTCCTCCTGAGTACCATCGGAAAG CTGTGTGAGGCGCTTATACTCAATTATGTTTGGATCTCTGTAAACACATTTTTGTTTCTT AGTCTTTCTCTTGTACAAATGATGTACTTCGGAAATGTTAGTGTATAACAGAATTGATGT TTGTTTTCTGTTCGATTTTAAACAGAGAAAATAAAAGGGGTTACAACTCCTTTTTTCTTT ACCTTTTTTTTTTTTTTTCATTTCAAAGTTGCTACCAGTGTATTCAATGACAGACAACAG AGAGACATACTGTAGAGTGTTTAATTGCTTAGTTGACAAAGCTGCTTTTGAATACTGGTG GTTCTATTCCTTTGACACTACGCACTTTTATAATATGTGTTAATGCTATATGACAAAATG CTCTGATTCCTAGTGCCAAAGGTTCAATTCAGTGTATATAACTGAACACACTCATCCATT TGTGCTCCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTATGGTGCTTAAAGTAAAGAGCCC ATCCTTTGCAAGTCATCCATGTTGTTCCTTAGGCATTTATCTTTGCTCAGATGGTTGAAG GATGGTGGCTTGTTTCCTGGTTTTTGTATTTGTGTCTAATGCACGTTTTAACATAATAGA CGCAATGCATTGTGTAGCTACAGTTTTCTGGAAAAGTCAATCTTTTAGAAATTGTTTTTC AAATCTTCAATAAATTTTTTTCTTTAAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTAGTCGGGGGTGGTGGGAGAAGGAGGAGGAGGCGGCGGCGAATCACTTATAAATGG CGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTTCATG GGCCTCTTCTTTATGAAGCAAAGTGTGTAAAGGTTGCCATAAAGGATAAACAAGTGAAAT ACTTTATACATTACAGTGGTTGGAATAAAAATTGGGATGAATGGGTTCCAGAAAGCAGAG TACTCAAATACGTGGACACCAATCTGCAGAAACAACGAGAACTTCAAAAAGCCAATCAGG AGCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCCCCTGGAAAGAAGACATCTGGTCTGC AACAGAAAAACGTTGAAGTGAAAACAAAAAAGAACAAGCAGAAAACACCTGGAAATGGAG AAGGTGGGAGTACCAGTGAGACACCTCAGCCTCCTCGCAAGAAAAGGGCCCGAGTAGATC CAACTGTTGAAAATGAGGAAACATTCATGAACAGAGTTGAAGTTAAAGTAAAGATTCCTG AAGAACTCAAACCATGGCTTGTTGATGACTGGGACTTAATCACCCGGCAAAAACAGCTGT TTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTAGAGGATTATGCAAATTACAAAA AGTCTCGAGGAAACACAGATAATAAGGAGTATGCTGTTAATGAAGTTGTGGCAGGGATAA AGGAATACTTCAATGTAATGTTGGGCACTCAGCTACTCTACAAGTTTGAGAGACCACAGT ATGCTGAAATTCTCGCCGATCACCCCGATGCGCCCATGTCCCAGGTGTATGGAGCACCAC ATCTACTGAGATTATTTGTACGAATTGGAGCAATGTTGGCCTATACACCTCTGGATGAGA AGAGCCTTGCTTTATTACTGAATTATCTTCACGATTTCCTAAAATACCTGGCAAAGAACT CTGCAACTTTGTTTAGTGCCAGCGATTATGAAGTTGCTCCTCCTGAGTACCATCGGAAAG CTGTGTGAGGCGCTTATACTCAATTATGTTTGGATCTCTGTAAACACATTTTTGTTTCTT AGTCTTTCTCTTGTACAAATGATGTACTTCGGAAATGTTAGTGTATAACAGAATTGATGT TTGTTTTCTGTTCGATTTTAAACAGAGAAAATAAAAGGGGTTACAACTCCTTTTTTCTTT ACCTTTTTTTTTTTTTTTCATTTCAAAGTTGCTACCAGTGTATTCAATGACAGACAACAG AGAGACATACTGTAGAGTGTTTAATTGCTTAGTTGACAAAGCTGCTTTTGAATACTGGTG GTTCTATTCCTTTGACACTACGCACTTTTATAATATGTGTTAATGCTATATGACAAAATG CTCTGATTCCTAGTGCCAAAGGTTCAATTCAGTGTATATAACTGAACACACTCATCCATT TGTGCTCCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTATGGTGCTTAAAGTAAAGAGCCC ATCCTTTGCAAGTCATCCATGTTGTTCCTTAGGCATTTATCTTTGCTCAGATGGTTGAAG GATGGTGGCTTGTTTCCTGGTTTTTGTATTTGTGTCTAATGCACGTTTTAACATAATAGA CGCAATGCATTGTGTAGCTACAGTTTTCTGGAAAAGTCAATCTTTTAGAAATTGTTTTTC AAATCTTCAATAAATTTTTTTCTTTAAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr21 (17739075-17739181) | |
| 1-101, gnl|Hg17|chr15 (76952365-76952459) | |
| 1-101, gnl|Mm7|chr9 (89743357-89743263) | |
| 495-596, gnl|bosTau2|chr21 (17752847-17752948) | |
| 495-596, gnl|canFam2|chr3 (60996694-60996582) | |
| 495-596, gnl|danRer3|chr18 (24174296-24174407) | |
| 495-596, gnl|dasNov1|scaffold_54734 (44068-43955) | |
| 495-596, gnl|echTel1|scaffold_306803 (3913-3817) | |
| 495-596, gnl|fr1|chrUn (228583316-228583203) | |
| 495-596, gnl|hg17|chr15 (76971610-76971723) | |
| 495-596, gnl|Hg17|chr15 (76971609-76971710) | |
| 495-596, gnl|loxAfr1|scaffold_3827 (94138-94251) | |
| 495-596, gnl|mm7|chr9 (89725419-89725306) | |
| 495-596, gnl|Mm7|chr9 (89725418-89725317) | |
| 495-596, gnl|monDom2|scaffold_41 (16035897-16035789) | |
| 495-596, gnl|oryCun1|scaffold_139521 (5048-4935) | |
| 495-596, gnl|panTro1|chr3 (192894427-192894328) | |
| 495-596, gnl|rheMac2|chr7 (58015505-58015618) | |
| 495-596, gnl|rn3|chr8 (95030297-95030184) | |
| 495-596, gnl|tetNig1|chr5 (10346093-10346205) | |
| 495-596, gnl|xenTro1|scaffold_5 (666057-665953) | |
| 642-1200, gnl|bosTau2|chr19 (7424431-7423866) | |
| 642-1200, gnl|Hg17|chrX (102737620-102737054) | |
| 642-1200, gnl|Mm7|chr19 (61090103-61090663) | |
| 697-1030, gnl|bosTau2|chr10 (30248427-30248742) | |
| 697-1030, gnl|Hg17|chr15 (62356421-62358276) | |
| 697-1030, gnl|Mm7|chr5 (137450977-137451310) | |
| 1213-1446, gnl|bosTau2|chr19 (7423875-7423647) | |
| 1213-1446, gnl|Hg17|chrX (102737063-102736824) | |
| 1213-1446, gnl|Mm7|chr19 (61090654-61090880) | |
| 1463-1731, gnl|bosTau2|chr19 (7423654-7423381) | |
| 1463-1731, gnl|Hg17|chrX (102736838-102736567) | |
| 1463-1731, gnl|Mm7|chr19 (61090873-61091159) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr21 (17739075-17739181) | |
| 1-101, gnl|Hg17|chr15 (76952365-76952459) | |
| 1-101, gnl|Mm7|chr9 (89743357-89743263) | |
| 495-596, gnl|bosTau2|chr21 (17752847-17752948) | |
| 495-596, gnl|canFam2|chr3 (60996694-60996582) | |
| 495-596, gnl|danRer3|chr18 (24174296-24174407) | |
| 495-596, gnl|dasNov1|scaffold_54734 (44068-43955) | |
| 495-596, gnl|echTel1|scaffold_306803 (3913-3817) | |
| 495-596, gnl|fr1|chrUn (228583316-228583203) | |
| 495-596, gnl|hg17|chr15 (76971610-76971723) | |
| 495-596, gnl|Hg17|chr15 (76971609-76971710) | |
| 495-596, gnl|loxAfr1|scaffold_3827 (94138-94251) | |
| 495-596, gnl|mm7|chr9 (89725419-89725306) | |
| 495-596, gnl|Mm7|chr9 (89725418-89725317) | |
| 495-596, gnl|monDom2|scaffold_41 (16035897-16035789) | |
| 495-596, gnl|oryCun1|scaffold_139521 (5048-4935) | |
| 495-596, gnl|panTro1|chr3 (192894427-192894328) | |
| 495-596, gnl|rheMac2|chr7 (58015505-58015618) | |
| 495-596, gnl|rn3|chr8 (95030297-95030184) | |
| 495-596, gnl|tetNig1|chr5 (10346093-10346205) | |
| 495-596, gnl|xenTro1|scaffold_5 (666057-665953) | |
| 642-1200, gnl|bosTau2|chr19 (7424431-7423866) | |
| 642-1200, gnl|Hg17|chrX (102737620-102737054) | |
| 642-1200, gnl|Mm7|chr19 (61090103-61090663) | |
| 697-1030, gnl|bosTau2|chr10 (30248427-30248742) | |
| 697-1030, gnl|Hg17|chr15 (62356421-62358276) | |
| 697-1030, gnl|Mm7|chr5 (137450977-137451310) | |
| 1213-1446, gnl|bosTau2|chr19 (7423875-7423647) | |
| 1213-1446, gnl|Hg17|chrX (102737063-102736824) | |
| 1213-1446, gnl|Mm7|chr19 (61090654-61090880) | |
| 1463-1731, gnl|bosTau2|chr19 (7423654-7423381) | |
| 1463-1731, gnl|Hg17|chrX (102736838-102736567) | |
| 1463-1731, gnl|Mm7|chr19 (61090873-61091159) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| ece (0.917221) | |
| eye (0.852515) | |
| amn (0.835422) | |
| fhi (0.678311) | |
| jca (0.569801) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| pla (0.534688) | |
| fty (0.527519) | |
| pty (0.428143) | |
| tes (0.415628) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| eru (0.360144) | |
| sin (0.349895) | |
| eje (0.296501) | |
| cst (0.280073) | |
| ese (0.253004) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.917221) | |
| eye (0.852515) | |
| amn (0.835422) | |
| fhi (0.678311) | |
| jca (0.569801) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| pla (0.534688) | |
| fty (0.527519) | |
| pty (0.428143) | |
| tes (0.415628) | |
| nmm (0.398406) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| eru (0.360144) | |
| sin (0.349895) | |
| eje (0.296501) | |
| cst (0.280073) | |
| ese (0.253004) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) |