Ss1.1-Pig4-TMW8036L18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGATCCTAGTCATGAGGGAAAACAAGAACCCAAATATTGTGAACTACTTGGACAGTTA CCTCGTGGGAGATGAACTGTGGGTTGTCATGGAATACTTGGCTGGAGGTTCTTTGACAGA TGTGGTGACAGAAACGTGCATGGATGAAGGCCAGATTGCAGCTGTGTGTCGGGAGTGCCT GCAGGCTTTGGAATTTCTGCATTCAAATCAAGTTATTCATAGAGACATCAAGAGTGACAA CATCCTGTTGGGAATGGATGGCTCTGTCAAGCTAACTGATTTTGGATTCTGTGCCCAGAT CACCCCAGAGCAGAGCAAACGGAGCACCATGGTGGGAACCCCATATTGGATGGCACCAGA GGTTGTAACTCGGAAGGCCTATGGACCCAAGGTTGACATTTGGTCCCTGGGCATCATGGC CATTGAAATGATTGAAGGGGAACCCCCATACCTCAACGAAAACCCTCTGAGAGCCTTGTA CCTCATTGCCACCAATGGGACCCCAGAGCTTCAGAACCCAGAGAAGCTGTCAGCTATCTT CCGAGACTTTTTGAACCGCTGTCTTGAGATGGATGTGGAGAAGAGAGGTTCAGCTAAAGA GCTGCTACAGCATCAGTTCCTGAAGATTGCAAAGCCCCTCTCCAGCCTCACTCCACTGAT TGCTGCAGCAAAGGAGGCAACCAAGAACAATCACTAAAACCACGTCACCCCAGCCTCATT GTGCCAAGCCTTCCGTGAAATAAATGCTCATTTCGGAAATTCCAACCCCCAATGCCCTCT CTTCCTTGTCTTGCTCCTTCTATTTCCTGGTCTAGTGCTCTCAAGACTTTGATCCTTGAA AACCATGTGTCCAGCATTGAAGAGAACTGCAATTGACTAATTGGATGACAGTCATTTTGA AATAAGGAATTTGCTTCCAGTTTGTGGATGTGAGGGTGGCTTATGATCAAGGGCTTATAT GAATAAACCCTGGGACTCCTATTTCTACGTAGCAACATCCCTCCCCCATCCATTCAGTTC TTGACTATATAAATTTTTGGCTTTATAACATTATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGATCCTAGTCATGAGGGAAAACAAGAACCCAAATATTGTGAACTACTTGGACAGTTA CCTCGTGGGAGATGAACTGTGGGTTGTCATGGAATACTTGGCTGGAGGTTCTTTGACAGA TGTGGTGACAGAAACGTGCATGGATGAAGGCCAGATTGCAGCTGTGTGTCGGGAGTGCCT GCAGGCTTTGGAATTTCTGCATTCAAATCAAGTTATTCATAGAGACATCAAGAGTGACAA CATCCTGTTGGGAATGGATGGCTCTGTCAAGCTAACTGATTTTGGATTCTGTGCCCAGAT CACCCCAGAGCAGAGCAAACGGAGCACCATGGTGGGAACCCCATATTGGATGGCACCAGA GGTTGTAACTCGGAAGGCCTATGGACCCAAGGTTGACATTTGGTCCCTGGGCATCATGGC CATTGAAATGATTGAAGGGGAACCCCCATACCTCAACGAAAACCCTCTGAGAGCCTTGTA CCTCATTGCCACCAATGGGACCCCAGAGCTTCAGAACCCAGAGAAGCTGTCAGCTATCTT CCGAGACTTTTTGAACCGCTGTCTTGAGATGGATGTGGAGAAGAGAGGTTCAGCTAAAGA GCTGCTACAGCATCAGTTCCTGAAGATTGCAAAGCCCCTCTCCAGCCTCACTCCACTGAT TGCTGCAGCAAAGGAGGCAACCAAGAACAATCACTAAAACCACGTCACCCCAGCCTCATT GTGCCAAGCCTTCCGTGAAATAAATGCTCATTTCGGAAATTCCAACCCCCAATGCCCTCT CTTCCTTGTCTTGCTCCTTCTATTTCCTGGTCTAGTGCTCTCAAGACTTTGATCCTTGAA AACCATGTGTCCAGCATTGAAGAGAACTGCAATTGACTAATTGGATGACAGTCATTTTGA AATAAGGAATTTGCTTCCAGTTTGTGGATGTGAGGGTGGCTTATGATCAAGGGCTTATAT GAATAAACCCTGGGACTCCTATTTCTACGTAGCAACATCCCTCCCCCATCCATTCAGTTC TTGACTATATAAATTTTTGGCTTTATAACATTATCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 75-447, gnl|bosTau2|chr12 (42346693-42347065) | |
| 75-447, gnl|Hg17|chrX (135104377-135104005) | |
| 75-447, gnl|Mm7|chr14 (115707246-115701656) | |
| 473-610, gnl|bosTau2|chr1 (42995702-42995565) | |
| 473-610, gnl|canFam2|chr33 (32898172-32898342) | |
| 473-610, gnl|canFam2|chr33 (32898334-32898198) | |
| 473-610, gnl|danRer3|chr15 (3265763-3265597) | |
| 473-610, gnl|danRer3|chr15 (3265606-3265741) | |
| 473-610, gnl|dasNov1|scaffold_122996 (419-272) | |
| 473-610, gnl|dasNov1|scaffold_122996 (269-404) | |
| 473-610, gnl|echTel1|scaffold_312665 (41698-41541) | |
| 473-610, gnl|echTel1|scaffold_312665 (41549-41685) | |
| 473-610, gnl|fr1|chrUn (57420108-57419949) | |
| 473-610, gnl|fr1|chrUn (57419958-57420093) | |
| 473-610, gnl|galGal2|chr9 (8969739-8969906) | |
| 473-610, gnl|galGal2|chr9 (8969894-8969766) | |
| 473-610, gnl|hg17|chr15 (19190025-19190161) | |
| 473-610, gnl|hg17|chr3 (198042353-198042523) | |
| 473-610, gnl|Hg17|chr3 (198042377-198042514) | |
| 473-610, gnl|loxAfr1|scaffold_5167 (24240-24073) | |
| 473-610, gnl|loxAfr1|scaffold_5167 (24081-24217) | |
| 473-610, gnl|mm7|chr16 (31696449-31696292) | |
| 473-610, gnl|mm7|chr16 (31696300-31696436) | |
| 473-610, gnl|Mm7|chr16 (31696436-31696299) | |
| 473-610, gnl|monDom2|scaffold_24 (26655065-26655235) | |
| 473-610, gnl|monDom2|scaffold_24 (26655227-26655091) | |
| 473-610, gnl|oryCun1|scaffold_117699 (2043-1875) | |
| 473-610, gnl|oryCun1|scaffold_117699 (1882-2018) | |
| 473-610, gnl|panTro1|chr2 (202227083-202227253) | |
| 473-610, gnl|panTro1|chr2 (202227245-202227109) | |
| 473-610, gnl|rheMac2|chr2 (188600335-188600187) | |
| 473-610, gnl|rheMac2|chr2 (188600195-188600331) | |
| 473-610, gnl|rn3|chr11 (70644429-70644595) | |
| 473-610, gnl|rn3|chr11 (70644587-70644451) | |
| 473-610, gnl|tetNig1|chr1_random (2386427-2386580) | |
| 473-610, gnl|tetNig1|chr1_random (2386577-2386442) | |
| 473-610, gnl|xenTro1|scaffold_346 (750157-749992) | |
| 473-610, gnl|xenTro1|scaffold_346 (749998-750134) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-447, gnl|bosTau2|chr12 (42346693-42347065) | |
| 75-447, gnl|Hg17|chrX (135104377-135104005) | |
| 75-447, gnl|Mm7|chr14 (115707246-115701656) | |
| 473-610, gnl|bosTau2|chr1 (42995702-42995565) | |
| 473-610, gnl|canFam2|chr33 (32898172-32898342) | |
| 473-610, gnl|canFam2|chr33 (32898334-32898198) | |
| 473-610, gnl|danRer3|chr15 (3265763-3265597) | |
| 473-610, gnl|danRer3|chr15 (3265606-3265741) | |
| 473-610, gnl|dasNov1|scaffold_122996 (419-272) | |
| 473-610, gnl|dasNov1|scaffold_122996 (269-404) | |
| 473-610, gnl|echTel1|scaffold_312665 (41698-41541) | |
| 473-610, gnl|echTel1|scaffold_312665 (41549-41685) | |
| 473-610, gnl|fr1|chrUn (57420108-57419949) | |
| 473-610, gnl|fr1|chrUn (57419958-57420093) | |
| 473-610, gnl|galGal2|chr9 (8969739-8969906) | |
| 473-610, gnl|galGal2|chr9 (8969894-8969766) | |
| 473-610, gnl|hg17|chr15 (19190025-19190161) | |
| 473-610, gnl|hg17|chr3 (198042353-198042523) | |
| 473-610, gnl|Hg17|chr3 (198042377-198042514) | |
| 473-610, gnl|loxAfr1|scaffold_5167 (24240-24073) | |
| 473-610, gnl|loxAfr1|scaffold_5167 (24081-24217) | |
| 473-610, gnl|mm7|chr16 (31696449-31696292) | |
| 473-610, gnl|mm7|chr16 (31696300-31696436) | |
| 473-610, gnl|Mm7|chr16 (31696436-31696299) | |
| 473-610, gnl|monDom2|scaffold_24 (26655065-26655235) | |
| 473-610, gnl|monDom2|scaffold_24 (26655227-26655091) | |
| 473-610, gnl|oryCun1|scaffold_117699 (2043-1875) | |
| 473-610, gnl|oryCun1|scaffold_117699 (1882-2018) | |
| 473-610, gnl|panTro1|chr2 (202227083-202227253) | |
| 473-610, gnl|panTro1|chr2 (202227245-202227109) | |
| 473-610, gnl|rheMac2|chr2 (188600335-188600187) | |
| 473-610, gnl|rheMac2|chr2 (188600195-188600331) | |
| 473-610, gnl|rn3|chr11 (70644429-70644595) | |
| 473-610, gnl|rn3|chr11 (70644587-70644451) | |
| 473-610, gnl|tetNig1|chr1_random (2386427-2386580) | |
| 473-610, gnl|tetNig1|chr1_random (2386577-2386442) | |
| 473-610, gnl|xenTro1|scaffold_346 (750157-749992) | |
| 473-610, gnl|xenTro1|scaffold_346 (749998-750134) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.267344) | |
| ebs (0.236602) | |
| eje (0.197668) | |
| sin (0.174948) | |
| nje (0.16592) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| ebs (0.236602) | |
| eje (0.197668) | |
| sin (0.174948) | |
| nje (0.16592) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| ldo (0.0970026) |