Non-Coding RNA Search

Ss1.1-Pig4-TMW8036L21.5

Sequence:


               
               ATGCATCAATCCTGTGTGGTTTAGTGTAAAAATGAGAACATGTTGGTATTTATCTATTGT
AAGATAAAAAAAAAAGTTGGTGGGTGAAAGAAATCATGTTATGATAAAAATTTTTGTAAT
TTTCTTGATGACTGGAATTTTTATTATGCATAACTGACAAATCAAGTTTCCAAGCAAATG
TTACATAGTGTAGGCTTTACTTAGCTTATCAATTTGTCATTTTGAAGCTAATTATTTTAA
TTAGGTTAACTATGTACAATATTTTAAGCATTACTCTTGTAAGATTTTGAAAACTACATT
TTAACATGGAACTCTAGGGATAGTCACCTTTTAAATCCTGTCGAAAAGCCATGTTTAAGA
TTTAATTTGCCAAAATAATGTCTTGTTAATATTCTTTCAGTAACGAAGTTGGGCAATATA
ACCAATGTTTAAAAAAGTTTAAAATGTATAGGTTGAGGCATTTGGGTGGTAAGAAAATGT
TATAGTGTATTATCCCTTTTCTTGAATATTGGAGGACCAAAAAATAAGGTGTATTGCGTC
TTAGCAGTGATTTTTAAATCCAATCTTGTTTCCAAAACCCATATGTCTGCCAGGGCCTTA
AAAGCCATCATGTAAATTACCAATAAAGTATAACATATGCAAACATAACAAAATTACTTC
CATAGTGACGATACTCCAACCATATGGATATTAGTCATAGAAAACTAGAGGTTTTATGAT
ATTTTTTTAAGTCTTTTTTTTGTTTGTTTGTTTGTTTTTGGTCTAGGTAGTCTGCACTTA
AATATCAACCATTTTCTTTTTTGCTTTTTCCTTAAAATTTATATGTATCCAATACAATTA
ATTGAGAAATGTATGTTTTTTATTATGCTGTATTTTCTTTTTATTTTTTAATTATTGTTT
ATATTTTCAATTATTAAAAAATGTACAAAATAAAGTTTCATTGCTGGTCTTATAAGAGCT
ATACAAGTTTCCTAAATGTATACCTGTAACTGCAGCAGTTCACCTATTTCAGAAATTTGG
AATTCTGTTCATTTGTTATTCTTAAGACCACCTCAAATTTAAAGGCTACCTTATTGTACG
TTTAAAGTGTATTATAACAGTGTGGTAGTTAATAAAACACTATTTTTTTTTCTTTTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCATCAATCCTGTGTGGTTTAGTGTAAAAATGAGAACATGTTGGTATTTATCTATTGT
AAGATAAAAAAAAAAGTTGGTGGGTGAAAGAAATCATGTTATGATAAAAATTTTTGTAAT
TTTCTTGATGACTGGAATTTTTATTATGCATAACTGACAAATCAAGTTTCCAAGCAAATG
TTACATAGTGTAGGCTTTACTTAGCTTATCAATTTGTCATTTTGAAGCTAATTATTTTAA
TTAGGTTAACTATGTACAATATTTTAAGCATTACTCTTGTAAGATTTTGAAAACTACATT
TTAACATGGAACTCTAGGGATAGTCACCTTTTAAATCCTGTCGAAAAGCCATGTTTAAGA
TTTAATTTGCCAAAATAATGTCTTGTTAATATTCTTTCAGTAACGAAGTTGGGCAATATA
ACCAATGTTTAAAAAAGTTTAAAATGTATAGGTTGAGGCATTTGGGTGGTAAGAAAATGT
TATAGTGTATTATCCCTTTTCTTGAATATTGGAGGACCAAAAAATAAGGTGTATTGCGTC
TTAGCAGTGATTTTTAAATCCAATCTTGTTTCCAAAACCCATATGTCTGCCAGGGCCTTA
AAAGCCATCATGTAAATTACCAATAAAGTATAACATATGCAAACATAACAAAATTACTTC
CATAGTGACGATACTCCAACCATATGGATATTAGTCATAGAAAACTAGAGGTTTTATGAT
ATTTTTTTAAGTCTTTTTTTTGTTTGTTTGTTTGTTTTTGGTCTAGGTAGTCTGCACTTA
AATATCAACCATTTTCTTTTTTGCTTTTTCCTTAAAATTTATATGTATCCAATACAATTA
ATTGAGAAATGTATGTTTTTTATTATGCTGTATTTTCTTTTTATTTTTTAATTATTGTTT
ATATTTTCAATTATTAAAAAATGTACAAAATAAAGTTTCATTGCTGGTCTTATAAGAGCT
ATACAAGTTTCCTAAATGTATACCTGTAACTGCAGCAGTTCACCTATTTCAGAAATTTGG
AATTCTGTTCATTTGTTATTCTTAAGACCACCTCAAATTTAAAGGCTACCTTATTGTACG
TTTAAAGTGTATTATAACAGTGTGGTAGTTAATAAAACACTATTTTTTTTTCTTTTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               118-237, - strand, RNAz p=0.905059
               

               
               550-688, - strand, RNAz p=0.917346

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, - strand, RNAz p=0.905059
               

               
               550-688, - strand, RNAz p=0.917346

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1138, gnl|bosTau2|chr2 (13901037-13899896)
               

               
               1-1138, gnl|Hg17|chr2 (174599884-174598765)
               

               
               1-1138, gnl|Mm7|chr2 (72781489-72780362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1138, gnl|bosTau2|chr2 (13901037-13899896)
               

               
               1-1138, gnl|Hg17|chr2 (174599884-174598765)
               

               
               1-1138, gnl|Mm7|chr2 (72781489-72780362)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	118-237, - strand, RNAz p=0.905059
	550-688, - strand, RNAz p=0.917346

	1-1138, gnl\|bosTau2\|chr2 (13901037-13899896)
	1-1138, gnl\|Hg17\|chr2 (174599884-174598765)
	1-1138, gnl\|Mm7\|chr2 (72781489-72780362)

	lin (0.436808)
	ret (0.3862)
	tra (0.369276)
	mga (0.32041)
	fco (0.314416)
	tbr (0.308356)
	bfe (0.299715)
	sag (0.182715)
	fty (0.17584)
	fhi (0.169578)
	nco (0.161734)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	kid (0.129735)
	eru (0.120048)
	eje (0.0988338)