Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M02.3

Sequence:


               
               TGAATTTAAGCCAACTGGGGATTCAAACTGATGACAAAGGTCATATCATAGTAGATGAAT
TCCAGAATACTAATGTAAAAGGCATTTACGCAGTTGGGGACGTGTGTGGAAGAGCGCTTC
TTACTCCAGTTGCGATTGCTGCTGGCCGGAAACTTGCCCATAGACTTTTTGAGTGCAAAG
AAGATTCCAAATTAGACTATGACAACATCCCCACAGTGGTATTTAGTCACCCCCCTATTG
GGACAGTGGGACTCACAGAAGATGAGGCCATTTGTAAATATGGAAAAGAAAATGTGAAGA
TTTATTCCACCACCTTTACTCCAATGTATCATGCTGTTACCAAAAGGAAAACAAAATGTG
TGATGAAAATGGTGTGTGCCAACAAAGAGGAAAAGGTAGTTGGGATCCATATGCAAGGAA
TTGGGTGTGATGAAATGCTGCAGGGTTTTGCAGTCGCAGTAAAAATGGGAGCAACAAAAT
CTGACTTTGATAACACTGTTGCCATTCATCCTACCTCTTCAGAAGAACTGGTCACACTTC
GTTGAGAAGTTCCTATGGCTGGCAGCTGGACCAGTAAACCTTCAAAAAGGAACCAGATCG
TCACGTTTACTTACCGTTCCCATTTTATGTATTTCATTATTGTAATCAGGATCTTCCAAT
AGTGGAAATTTTCAGTAAATTTATTTATGTAGTTAGAAAATTTGTCATCCAGGATTGATT
TTCACATGTCTCACTAATTACTATTTTTTCTTATTAATATCTCCGTGATCGTTTTGTTTT
GTTTTAGCCTCATCCCAAGTATAAAACTACATGAAGTACAGTTAAATGAATGCACTTGAA
CAAATAGCACTTGCTGATTTTTATAGACAAAGATGACAGCAGCTCTTCATACTTAAATAA
TCCAAGTACAGAGTTGTTATATTTCTTTGAAGCCAGTACTGTGCTTTGCAGATTGCAAAG
ACTGCAAAGCTGCTTCAGGGATGCGACCTTTCACTAAAAGCATATAACTTGAAAGGCCCG
CCTCCCATATTTTATACTTTCTTTTGTTCTAAATGATTAAAAATGGTTTGTGCTACTTTT
ATGAGATGAAGTACATCAAATTCGGGAAAGATTTAAGGAGTGAGGGACATTTTAGGAGTG
ATTCTTGCTTTCAGAAGGGGGGGATTCAGATACTTCAAAAGTCCCCATCTCTGCTAAGAG
TTCATAGTTCAAGGAATGATTTCAACTTTTGTATCTGTTCTTGTCATTTTATTTTTTGAA
AAAATTTCTAAAAATCTGAAAATAAAATTACAGTCTTCTTGTAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATTTAAGCCAACTGGGGATTCAAACTGATGACAAAGGTCATATCATAGTAGATGAAT
TCCAGAATACTAATGTAAAAGGCATTTACGCAGTTGGGGACGTGTGTGGAAGAGCGCTTC
TTACTCCAGTTGCGATTGCTGCTGGCCGGAAACTTGCCCATAGACTTTTTGAGTGCAAAG
AAGATTCCAAATTAGACTATGACAACATCCCCACAGTGGTATTTAGTCACCCCCCTATTG
GGACAGTGGGACTCACAGAAGATGAGGCCATTTGTAAATATGGAAAAGAAAATGTGAAGA
TTTATTCCACCACCTTTACTCCAATGTATCATGCTGTTACCAAAAGGAAAACAAAATGTG
TGATGAAAATGGTGTGTGCCAACAAAGAGGAAAAGGTAGTTGGGATCCATATGCAAGGAA
TTGGGTGTGATGAAATGCTGCAGGGTTTTGCAGTCGCAGTAAAAATGGGAGCAACAAAAT
CTGACTTTGATAACACTGTTGCCATTCATCCTACCTCTTCAGAAGAACTGGTCACACTTC
GTTGAGAAGTTCCTATGGCTGGCAGCTGGACCAGTAAACCTTCAAAAAGGAACCAGATCG
TCACGTTTACTTACCGTTCCCATTTTATGTATTTCATTATTGTAATCAGGATCTTCCAAT
AGTGGAAATTTTCAGTAAATTTATTTATGTAGTTAGAAAATTTGTCATCCAGGATTGATT
TTCACATGTCTCACTAATTACTATTTTTTCTTATTAATATCTCCGTGATCGTTTTGTTTT
GTTTTAGCCTCATCCCAAGTATAAAACTACATGAAGTACAGTTAAATGAATGCACTTGAA
CAAATAGCACTTGCTGATTTTTATAGACAAAGATGACAGCAGCTCTTCATACTTAAATAA
TCCAAGTACAGAGTTGTTATATTTCTTTGAAGCCAGTACTGTGCTTTGCAGATTGCAAAG
ACTGCAAAGCTGCTTCAGGGATGCGACCTTTCACTAAAAGCATATAACTTGAAAGGCCCG
CCTCCCATATTTTATACTTTCTTTTGTTCTAAATGATTAAAAATGGTTTGTGCTACTTTT
ATGAGATGAAGTACATCAAATTCGGGAAAGATTTAAGGAGTGAGGGACATTTTAGGAGTG
ATTCTTGCTTTCAGAAGGGGGGGATTCAGATACTTCAAAAGTCCCCATCTCTGCTAAGAG
TTCATAGTTCAAGGAATGATTTCAACTTTTGTATCTGTTCTTGTCATTTTATTTTTTGAA
AAAATTTCTAAAAATCTGAAAATAAAATTACAGTCTTCTTGTAAAATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61842501|ref|XP_582848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842501|ref|XP_582848.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1297, gnl|bosTau2|chr27 (16594578-16595911)
               

               
               1-1297, gnl|Hg17|chr8 (30666236-30655134)
               

               
               1-1297, gnl|Mm7|chr8 (32453555-32466006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1297, gnl|bosTau2|chr27 (16594578-16595911)
               

               
               1-1297, gnl|Hg17|chr8 (30666236-30655134)
               

               
               1-1297, gnl|Mm7|chr8 (32453555-32466006)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               lin (0.728014)
               

               
               clu (0.598229)
               

               
               sin (0.524843)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               clu (0.598229)
               

               
               sin (0.524843)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-1297, gnl\|bosTau2\|chr27 (16594578-16595911)
	1-1297, gnl\|Hg17\|chr8 (30666236-30655134)
	1-1297, gnl\|Mm7\|chr8 (32453555-32466006)

	lin (0.728014)
	clu (0.598229)
	sin (0.524843)
	col (0.390016)
	thg (0.380373)
	liv (0.292569)
	hea (0.204499)
	jej (0.197844)
	spl (0.143184)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)