Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M04.3

Sequence:


               
               CCCTGCTGAGGGAACATCCTGCCTCACAGCTGAGCCTCAAAGATGTAGGGCCTCACATGA
CCCTGCCAAGGAGGGCAGCTGTGCCTCAAACTACCCCCATCTAGAAATGAGGGAAGCACA
TGTATTGAGCCACACTGTGTGCTATGGAAGCTAAACTAAGCACAAGGGTGACTGTTCACT
TTTGCAGATGAATCTGGGGCCAGAGAGGAGCAGGCTTACCCAGGTCTCCTACCTCTCAAC
CCCCCAGGATACTGATAGAAATGCATGGGATGCTTTCAGTCATCACAGAGATTAGGAGAC
ACTCCTGGCATTAGTGGGTGGGGCCAGGGACAGCAAACATCTCAGTCGCATAGGACAGTC
CTGCCCAATGATGGAACATCTCACCGAGGATGCCAGTTCCACTTGCGTCAACAAACAACA
TGCCCTGGCTTCAAGTCTTGACCCGGCCACTTCCTCTTTTCCCCTGCCCTCTTGGCCTCT
GTTGGCACTTCAGAGGTCAGGCATGAGATAATGGACAGAGGCATGCTTAGCATGGGGCCA
GAGGGAGGACAGAGTGGGCTTTTCTGAGCAGGAGGAAGCAGGGGCTTCTTGGTGTTGTTC
CGCCGCTGTTGCAGATACTCCTGGCCCCGGAAATGGCCCAGCCTGGTCTGACCTCCTGAC
CTTAGACATCCCTGGATGTCTGCGAGATGTGAGCTGGGCCTGACTGCTGCCTTCTTACCC
CAAGGCAGGAAAAGTCCCTGAGCCAACCTGACTTCTCTGAGCTGTCATGGGCCCCAAGAG
AGGGCCAAAGATTGGCCCTCATACAGGACTCTGAGATTCTCTCTACCACACACACACACA
CACACATACACACACACACAAACACATGCACCCACAAACATACACATGAAAAGCTAGAAT
GGTAGGGCATATCAGCGCCTATGGTTTTCTCCACCAAAGAGGAGCAGATCCATGGAGAAA
ACCAGCAACCTCCCACTCACATTTCACAGCAGGGAAGGGGAGCTTGACCCTCAGAAAAGA
AGTACAGGCCACAAGCAACTTCCCTTGGTTCATTTGGAAGGAAGTTTTTCCCATGAGTCA
TACCTAAGGTTCAATTCAGCTTTACAGTTAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCTGAGGGAACATCCTGCCTCACAGCTGAGCCTCAAAGATGTAGGGCCTCACATGA
CCCTGCCAAGGAGGGCAGCTGTGCCTCAAACTACCCCCATCTAGAAATGAGGGAAGCACA
TGTATTGAGCCACACTGTGTGCTATGGAAGCTAAACTAAGCACAAGGGTGACTGTTCACT
TTTGCAGATGAATCTGGGGCCAGAGAGGAGCAGGCTTACCCAGGTCTCCTACCTCTCAAC
CCCCCAGGATACTGATAGAAATGCATGGGATGCTTTCAGTCATCACAGAGATTAGGAGAC
ACTCCTGGCATTAGTGGGTGGGGCCAGGGACAGCAAACATCTCAGTCGCATAGGACAGTC
CTGCCCAATGATGGAACATCTCACCGAGGATGCCAGTTCCACTTGCGTCAACAAACAACA
TGCCCTGGCTTCAAGTCTTGACCCGGCCACTTCCTCTTTTCCCCTGCCCTCTTGGCCTCT
GTTGGCACTTCAGAGGTCAGGCATGAGATAATGGACAGAGGCATGCTTAGCATGGGGCCA
GAGGGAGGACAGAGTGGGCTTTTCTGAGCAGGAGGAAGCAGGGGCTTCTTGGTGTTGTTC
CGCCGCTGTTGCAGATACTCCTGGCCCCGGAAATGGCCCAGCCTGGTCTGACCTCCTGAC
CTTAGACATCCCTGGATGTCTGCGAGATGTGAGCTGGGCCTGACTGCTGCCTTCTTACCC
CAAGGCAGGAAAAGTCCCTGAGCCAACCTGACTTCTCTGAGCTGTCATGGGCCCCAAGAG
AGGGCCAAAGATTGGCCCTCATACAGGACTCTGAGATTCTCTCTACCACACACACACACA
CACACATACACACACACACAAACACATGCACCCACAAACATACACATGAAAAGCTAGAAT
GGTAGGGCATATCAGCGCCTATGGTTTTCTCCACCAAAGAGGAGCAGATCCATGGAGAAA
ACCAGCAACCTCCCACTCACATTTCACAGCAGGGAAGGGGAGCTTGACCCTCAGAAAAGA
AGTACAGGCCACAAGCAACTTCCCTTGGTTCATTTGGAAGGAAGTTTTTCCCATGAGTCA
TACCTAAGGTTCAATTCAGCTTTACAGTTAAAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q64PI9_BACFR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q64PI9_BACFR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-720, - strand, RNAz p=0.93819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-720, - strand, RNAz p=0.93819

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-866, gnl|bosTau2|chr7 (22167902-22168767)
               

               
               10-866, gnl|Hg17|chr5 (177594668-177593830)
               


               
               881-1114, gnl|bosTau2|chr7 (22169013-22169241)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-866, gnl|bosTau2|chr7 (22167902-22168767)
               

               
               10-866, gnl|Hg17|chr5 (177594668-177593830)
               


               
               881-1114, gnl|bosTau2|chr7 (22169013-22169241)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	10-866, gnl\|bosTau2\|chr7 (22167902-22168767)
	10-866, gnl\|Hg17\|chr5 (177594668-177593830)

	881-1114, gnl\|bosTau2\|chr7 (22169013-22169241)