Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M05.5

Sequence:


               
               TCCTTTCTTCCTGCTGCGCCCGCACGCTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCG
GCACCACCTGAGGATCCCAGAAGCCGCCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAG
GAAAGCAATAGAAGAACTACTTAAAGAGGCAAAACGTGGAAAGACGAGGGCAGAAACAAT
GGGACCTATGGGTTGGATGAAGTGTCCTCTTGCTGGTACCAATAAGAGATTTCTCATTAA
CACAATTAAGAACACTCTGCCGTCCCACAAGGAGCAAGACCACGAACCCAAAGAGGCCAG
TGCGGAGCCTGCGAAAAGCCAGAGCCAGAAGGAGGAAGGCCGGCAGAAGCACAGACCGCA
TCCGTACAAGCCGGGCGGCCGCGCAGGAGGCGCCGCCCGCCGCTCCCCGGGGAAGCGGGG
CCAGGAGAAGCCGCAGCCGCGCTCCCACACGCGGTGAGGCGGGGCGAGGGCTCGGGCGTC
CCCGCCCCCGGCCCGGGGATGCGGAGACCCGGCGAGGACCTGCCCGCGGCCGCGCGGCCG
CCCATGCGGGACGTCCCGGCTGCAGCAGCGCGTCGCCGAGGCTCGTGCTCTGCAGGTGCC
CCGGCAGCGAGTTCAGGCTGCCTCGCGGGGCAATAGCCCTGGGTATTGTTTCCATTCTAC
TTTGGGAGCTGGCTTCAAAATAAAGCTAGAACTTAAACGTTTTCAGAGATTGCTAAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTTCTTCCTGCTGCGCCCGCACGCTTCGCGGTATGGGGCAGAGCCTTCGGCGGGCCG
GCACCACCTGAGGATCCCAGAAGCCGCCCCCGCGATGGAAGAGGACCAGGAGCTGGAGAG
GAAAGCAATAGAAGAACTACTTAAAGAGGCAAAACGTGGAAAGACGAGGGCAGAAACAAT
GGGACCTATGGGTTGGATGAAGTGTCCTCTTGCTGGTACCAATAAGAGATTTCTCATTAA
CACAATTAAGAACACTCTGCCGTCCCACAAGGAGCAAGACCACGAACCCAAAGAGGCCAG
TGCGGAGCCTGCGAAAAGCCAGAGCCAGAAGGAGGAAGGCCGGCAGAAGCACAGACCGCA
TCCGTACAAGCCGGGCGGCCGCGCAGGAGGCGCCGCCCGCCGCTCCCCGGGGAAGCGGGG
CCAGGAGAAGCCGCAGCCGCGCTCCCACACGCGGTGAGGCGGGGCGAGGGCTCGGGCGTC
CCCGCCCCCGGCCCGGGGATGCGGAGACCCGGCGAGGACCTGCCCGCGGCCGCGCGGCCG
CCCATGCGGGACGTCCCGGCTGCAGCAGCGCGTCGCCGAGGCTCGTGCTCTGCAGGTGCC
CCGGCAGCGAGTTCAGGCTGCCTCGCGGGGCAATAGCCCTGGGTATTGTTTCCATTCTAC
TTTGGGAGCTGGCTTCAAAATAAAGCTAGAACTTAAACGTTTTCAGAGATTGCTAAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31455208|gb|AAH06972.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31455208|gb|AAH06972.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               195-313, - strand, RNAz p=0.530276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-313, - strand, RNAz p=0.530276

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-124, gnl|bosTau2|chr12 (17897427-17897305)
               

               
               2-124, gnl|Hg17|chr13 (27094037-27094150)
               

               
               2-124, gnl|Mm7|chr5 (145971975-145972101)
               


               
               195-720, gnl|bosTau2|chr12 (16980769-16981301)
               

               
               195-720, gnl|Hg17|chr13 (27137822-27138412)
               

               
               195-720, gnl|Mm7|chr5 (146005051-146005680)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-124, gnl|bosTau2|chr12 (17897427-17897305)
               

               
               2-124, gnl|Hg17|chr13 (27094037-27094150)
               

               
               2-124, gnl|Mm7|chr5 (145971975-145972101)
               


               
               195-720, gnl|bosTau2|chr12 (16980769-16981301)
               

               
               195-720, gnl|Hg17|chr13 (27137822-27138412)
               

               
               195-720, gnl|Mm7|chr5 (146005051-146005680)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ebs (0.354904)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	2-124, gnl\|bosTau2\|chr12 (17897427-17897305)
	2-124, gnl\|Hg17\|chr13 (27094037-27094150)
	2-124, gnl\|Mm7\|chr5 (145971975-145972101)

	195-720, gnl\|bosTau2\|chr12 (16980769-16981301)
	195-720, gnl\|Hg17\|chr13 (27137822-27138412)
	195-720, gnl\|Mm7\|chr5 (146005051-146005680)

	ebs (0.354904)
	nlu (0.191681)
	mcp (0.170648)
	nco (0.161734)
	lnt (0.142308)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)