Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M10.3

Sequence:


               
               AGCGCCAAGGTGGTGTACGGCGACACCGACTCCGTCATGTGCCGATTTGGCGTCTCCTCT
GTGGCCGAGGCGATGGCCCTGGGGCGCGAGGCCGCAGACTGGGTGTCTGGCCACTTCCCC
GCGCCCATCCGGCTGGAGTTTGAGAAAGTCTACTTCCCCTACCTGCTCATCAGCAAGAAG
CGGTACGCCGGCCTGCTCTTCTCCTCCCGGCCGGACACCCATGACCGCATGGACTGCAAG
GGCCTGGAGGCCGTGCGCAGGGACAACTGCCCCCTCGTGGCCAACCTCGTCACCGCCTCG
CTGCGCCGCCTGCTCATCGATCGAGACCCCGCCGGCGCCGTGGCGCATGCGCAGGACGTC
ATCTCCGACCTGCTGTGTAATCGCATCGACATCTCGCAGCTGGTCATCACCAAGGAGCTG
ACCCGCGCGGCCGCCGACTACGCGGGCAAGCAGGCTCACGTGGAGCTGGCCGAGAGGATG
AGGAAGCGGGACCCCGGGAGCGCGCCCAGCCTGGGCGACCGAGTCCCCTACGTGATCATC
AGTGCCGCCAAGGGCGTGGCCGCCTACATGAAGTCCGAGGACCCCCTCTTCGTGCTGGAG
CACAGTCTGCCCATCGACACGCAGTACTACCTGGAGCAGCAGCTCGCCAAGCCCCTCCTG
CGCATCTTTGAGCCCATTCTGGGCGAGGGCCGTGCGGAGGCTGTGCTGCTGCGCGGGGAC
CACACGCGCTGCAAGACTGTGCTCACCGGCAAGGTGGGCGGCCTCCTGGCCTTCGCCAAA
CGCCGAAACTGCTGCATTGGCTGCCGCACTGTCCTCAGCCACCAGGGAGCCGTGTGCAAG
TTCTGCCAGCCCCGGGAGTCAGAGCTCTATCAGAAAGAGGTGTCCCACCTCAATGCCCTG
GAGGAGCGCTTCTCACGCCTGTGGACCCAGTGCCAGCGCTGCCAGGGCAGCCTGCACGAG
GATGTCATCTGCACCAGCCGAGACTGCCCCATCTTCTACATGCGCAAGAAGGTGCGGAAG
GACCTGGAGGACCAGGAGCAGCTTCTGAGGCGCTTCGGCCCCCCCGGCCCCGAGGCCTGG
TGACCTCTGACCTCAGCCAACCTCCCACGAGGGCCTCGGGTGGCGGGACCGGTGGGGAAT
GAATAAAGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCCAAGGTGGTGTACGGCGACACCGACTCCGTCATGTGCCGATTTGGCGTCTCCTCT
GTGGCCGAGGCGATGGCCCTGGGGCGCGAGGCCGCAGACTGGGTGTCTGGCCACTTCCCC
GCGCCCATCCGGCTGGAGTTTGAGAAAGTCTACTTCCCCTACCTGCTCATCAGCAAGAAG
CGGTACGCCGGCCTGCTCTTCTCCTCCCGGCCGGACACCCATGACCGCATGGACTGCAAG
GGCCTGGAGGCCGTGCGCAGGGACAACTGCCCCCTCGTGGCCAACCTCGTCACCGCCTCG
CTGCGCCGCCTGCTCATCGATCGAGACCCCGCCGGCGCCGTGGCGCATGCGCAGGACGTC
ATCTCCGACCTGCTGTGTAATCGCATCGACATCTCGCAGCTGGTCATCACCAAGGAGCTG
ACCCGCGCGGCCGCCGACTACGCGGGCAAGCAGGCTCACGTGGAGCTGGCCGAGAGGATG
AGGAAGCGGGACCCCGGGAGCGCGCCCAGCCTGGGCGACCGAGTCCCCTACGTGATCATC
AGTGCCGCCAAGGGCGTGGCCGCCTACATGAAGTCCGAGGACCCCCTCTTCGTGCTGGAG
CACAGTCTGCCCATCGACACGCAGTACTACCTGGAGCAGCAGCTCGCCAAGCCCCTCCTG
CGCATCTTTGAGCCCATTCTGGGCGAGGGCCGTGCGGAGGCTGTGCTGCTGCGCGGGGAC
CACACGCGCTGCAAGACTGTGCTCACCGGCAAGGTGGGCGGCCTCCTGGCCTTCGCCAAA
CGCCGAAACTGCTGCATTGGCTGCCGCACTGTCCTCAGCCACCAGGGAGCCGTGTGCAAG
TTCTGCCAGCCCCGGGAGTCAGAGCTCTATCAGAAAGAGGTGTCCCACCTCAATGCCCTG
GAGGAGCGCTTCTCACGCCTGTGGACCCAGTGCCAGCGCTGCCAGGGCAGCCTGCACGAG
GATGTCATCTGCACCAGCCGAGACTGCCCCATCTTCTACATGCGCAAGAAGGTGCGGAAG
GACCTGGAGGACCAGGAGCAGCTTCTGAGGCGCTTCGGCCCCCCCGGCCCCGAGGCCTGG
TGACCTCTGACCTCAGCCAACCTCCCACGAGGGCCTCGGGTGGCGGGACCGGTGGGGAAT
GAATAAAGTTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q53NH0_ORYSA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q53NH0_ORYSA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               116-323, gnl|bosTau2|chr18 (49247424-49247633)
               

               
               116-323, gnl|Hg17|chr19 (55609853-55610059)
               

               
               116-323, gnl|Mm7|chr7 (40709759-40709539)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-323, gnl|bosTau2|chr18 (49247424-49247633)
               

               
               116-323, gnl|Hg17|chr19 (55609853-55610059)
               

               
               116-323, gnl|Mm7|chr7 (40709759-40709539)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nbm (0.0993246)

	116-323, gnl\|bosTau2\|chr18 (49247424-49247633)
	116-323, gnl\|Hg17\|chr19 (55609853-55610059)
	116-323, gnl\|Mm7\|chr7 (40709759-40709539)