Ss1.1-Pig4-TMW8036M13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTAAAGTCACAGCTAGTGGCTTCACAGGAAAAGGTTCAGAATTTAGAAGACACCCTGC AGAATGTAAACCTGCAAATGTCCCAGATTAAATCTGACCTACGCATGACTCAGCAGGAAA AGGAAGCTTTAAAACAAGAAGTAATGTCTTTACACAAGCAGCTTCAGAATGCTGGTGACA AGAACTGGGCCCCCGAAGTAGCTACCCACCCATCAGGATTCCCTAACCAACAGCAAAGGC TGTCCTGGGACAAGTTGGATCAACTGATGAATGAGGAACAACAGCTGCTTTGGCAAGAGA ATGAGAGACTCCAGACCGTGGTACAGAACACCAAAGCAGAACTCATTCACTCCCGGGAGA AGGTACGTCAACTGGAATCCAACCTTCTTCTTCCTAAGCACCAAAAACATCTAAGCTCAT CAGGTACCATGAAGCCCCCAGAGCAAGAGAAGTTGAGCCTAAAGAGAGAATGTGAACAGG TTCAAAAGGAACGATCTCCTACTAATAGGAAGGTTAGTCAGATGAATTCCCTTGAACGAG AATTAGAAACAATTCATTTAGAAAATGAAGGCCTGAAAAAGAAACAAGTAAAACTGGATG AGCAGCTAATGGAGATGCAGCATCTGAGGTCCACTATGTTTAGCCCCTCCCCTAATGCTT GGGATCTGCAGTTGCTCCAGCAGCAAGCTTGTCCGATGGTTCCCAGGGAGCAGTTTCTGC AGCTTCAACACCAGCTGCTGCAGGCAGAAAGGATAAACCAGTGCCTGCAGGAGGAACTTG AACACAGGACTTCCGAAACCAACACACCACAGGAAAACCAGGAACACCTGGTAACTGTGA TGGAGGAAAGAATGATGGAAGTTGAACAGAAATTGAAACTGGTGAAAAGGCTTCTTCAGG AGAAAGTGAATCAGCTCAAAGAACAACTCTGCAAGAATACTAAAGCAGATGCAATGGTGA AGGATTTGTATGTTGAAAATGCCCAGTTATTAAAAGCTCTGGAAATGACTGAACAGCGAC AAAAAACAGCAGAGAAGAAAAATTACCTCCTAGAAGAGAAGATTGCCAGCCTCAGTAACA TAGTCAGGAATCTGACACCAGCACCACTGACTTCTACACCTCCCCTGAGGTCATAGCCAA GCCAAAGAAAAACTCATAGTTGTGCACTTTACTGACATGAATGAAACATTTCAGTTTGTT CTCTCAACCTTTTTTAAAAAACAAAACAAAACCTTTGATGGCTTAAAGTTAATAAGCCTA ACCTAAAACATGTAGCAACATAATTAAAATCTTAATTTATTGTAATTAGGTTTTCGAAAT AGACTGTAATGGGTATTGCAAACAAATACATATTTTGCTGTCTAAATTATTCCCTACTTC GATTAAAAAAAAAAATTCTAACAGCCACCAAGAAGGTAATGGGAAAACAACTGAAGACTT TCTGGCCTGGAAACTTCCTCATGCTGTGGGCATGGCCATAATACAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTAAAGTCACAGCTAGTGGCTTCACAGGAAAAGGTTCAGAATTTAGAAGACACCCTGC AGAATGTAAACCTGCAAATGTCCCAGATTAAATCTGACCTACGCATGACTCAGCAGGAAA AGGAAGCTTTAAAACAAGAAGTAATGTCTTTACACAAGCAGCTTCAGAATGCTGGTGACA AGAACTGGGCCCCCGAAGTAGCTACCCACCCATCAGGATTCCCTAACCAACAGCAAAGGC TGTCCTGGGACAAGTTGGATCAACTGATGAATGAGGAACAACAGCTGCTTTGGCAAGAGA ATGAGAGACTCCAGACCGTGGTACAGAACACCAAAGCAGAACTCATTCACTCCCGGGAGA AGGTACGTCAACTGGAATCCAACCTTCTTCTTCCTAAGCACCAAAAACATCTAAGCTCAT CAGGTACCATGAAGCCCCCAGAGCAAGAGAAGTTGAGCCTAAAGAGAGAATGTGAACAGG TTCAAAAGGAACGATCTCCTACTAATAGGAAGGTTAGTCAGATGAATTCCCTTGAACGAG AATTAGAAACAATTCATTTAGAAAATGAAGGCCTGAAAAAGAAACAAGTAAAACTGGATG AGCAGCTAATGGAGATGCAGCATCTGAGGTCCACTATGTTTAGCCCCTCCCCTAATGCTT GGGATCTGCAGTTGCTCCAGCAGCAAGCTTGTCCGATGGTTCCCAGGGAGCAGTTTCTGC AGCTTCAACACCAGCTGCTGCAGGCAGAAAGGATAAACCAGTGCCTGCAGGAGGAACTTG AACACAGGACTTCCGAAACCAACACACCACAGGAAAACCAGGAACACCTGGTAACTGTGA TGGAGGAAAGAATGATGGAAGTTGAACAGAAATTGAAACTGGTGAAAAGGCTTCTTCAGG AGAAAGTGAATCAGCTCAAAGAACAACTCTGCAAGAATACTAAAGCAGATGCAATGGTGA AGGATTTGTATGTTGAAAATGCCCAGTTATTAAAAGCTCTGGAAATGACTGAACAGCGAC AAAAAACAGCAGAGAAGAAAAATTACCTCCTAGAAGAGAAGATTGCCAGCCTCAGTAACA TAGTCAGGAATCTGACACCAGCACCACTGACTTCTACACCTCCCCTGAGGTCATAGCCAA GCCAAAGAAAAACTCATAGTTGTGCACTTTACTGACATGAATGAAACATTTCAGTTTGTT CTCTCAACCTTTTTTAAAAAACAAAACAAAACCTTTGATGGCTTAAAGTTAATAAGCCTA ACCTAAAACATGTAGCAACATAATTAAAATCTTAATTTATTGTAATTAGGTTTTCGAAAT AGACTGTAATGGGTATTGCAAACAAATACATATTTTGCTGTCTAAATTATTCCCTACTTC GATTAAAAAAAAAAATTCTAACAGCCACCAAGAAGGTAATGGGAAAACAACTGAAGACTT TCTGGCCTGGAAACTTCCTCATGCTGTGGGCATGGCCATAATACAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 613-714, + strand, RNAz p=0.75754 | |
| 650-813, - strand, RNAz p=0.990394 | |
| 924-1043, + strand, RNAz p=0.872998 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 613-714, + strand, RNAz p=0.75754 | |
| 650-813, - strand, RNAz p=0.990394 | |
| 924-1043, + strand, RNAz p=0.872998 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020921, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 34-149, gnl|bosTau2|chr10 (29164440-29164325) | |
| 34-149, gnl|Hg17|chr14 (50278198-50278083) | |
| 34-149, gnl|Mm7|chr12 (67971126-67971012) | |
| 180-365, gnl|bosTau2|chr10 (29136445-29136260) | |
| 180-365, gnl|canFam2|chr8 (30124939-30125056) | |
| 180-365, gnl|dasNov1|scaffold_99181 (5589-5472) | |
| 180-365, gnl|echTel1|scaffold_316072 (72074-72191) | |
| 180-365, gnl|fr1|chrUn (2707194-2707077) | |
| 180-365, gnl|galGal2|chr5 (54602532-54602648) | |
| 180-365, gnl|hg17|chr14 (50275773-50275890) | |
| 180-365, gnl|Hg17|chr14 (50275958-50275773) | |
| 180-365, gnl|mm7|chr12 (67969001-67969118) | |
| 180-365, gnl|Mm7|chr12 (67969186-67969001) | |
| 180-365, gnl|oryCun1|scaffold_177203 (169633-169515) | |
| 180-365, gnl|panTro1|chr15 (49693842-49693959) | |
| 180-365, gnl|rheMac2|chr7 (113793893-113794010) | |
| 180-365, gnl|rn3|chr6 (92147768-92147885) | |
| 180-365, gnl|tetNig1|chr10 (11273998-11273875) | |
| 180-365, gnl|xenTro1|scaffold_341 (863771-863888) | |
| 613-813, gnl|bosTau2|chr10 (29128434-29128231) | |
| 613-813, gnl|canFam2|chr8 (30116274-30116523) | |
| 613-813, gnl|dasNov1|scaffold_8824 (13860-14128) | |
| 613-813, gnl|galGal2|chr5 (54597984-54598238) | |
| 613-813, gnl|hg17|chr14 (50265962-50266204) | |
| 613-813, gnl|Hg17|chr14 (50266193-50265990) | |
| 613-813, gnl|loxAfr1|scaffold_3115 (5354-5084) | |
| 613-813, gnl|mm7|chr12 (67961809-67962036) | |
| 613-813, gnl|Mm7|chr12 (67962025-67961825) | |
| 613-813, gnl|oryCun1|scaffold_186612 (10975-11232) | |
| 613-813, gnl|panTro1|chr15 (49684087-49684329) | |
| 613-813, gnl|rheMac2|chr7 (113783767-113784023) | |
| 613-813, gnl|rn3|chr6 (92140706-92140953) | |
| 613-813, gnl|xenTro1|scaffold_341 (856415-856612) | |
| 924-1441, gnl|bosTau2|chr10 (29122510-29121999) | |
| 924-1441, gnl|Hg17|chr14 (50260143-50259659) | |
| 924-1441, gnl|Mm7|chr12 (67955951-67955453) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-149, gnl|bosTau2|chr10 (29164440-29164325) | |
| 34-149, gnl|Hg17|chr14 (50278198-50278083) | |
| 34-149, gnl|Mm7|chr12 (67971126-67971012) | |
| 180-365, gnl|bosTau2|chr10 (29136445-29136260) | |
| 180-365, gnl|canFam2|chr8 (30124939-30125056) | |
| 180-365, gnl|dasNov1|scaffold_99181 (5589-5472) | |
| 180-365, gnl|echTel1|scaffold_316072 (72074-72191) | |
| 180-365, gnl|fr1|chrUn (2707194-2707077) | |
| 180-365, gnl|galGal2|chr5 (54602532-54602648) | |
| 180-365, gnl|hg17|chr14 (50275773-50275890) | |
| 180-365, gnl|Hg17|chr14 (50275958-50275773) | |
| 180-365, gnl|mm7|chr12 (67969001-67969118) | |
| 180-365, gnl|Mm7|chr12 (67969186-67969001) | |
| 180-365, gnl|oryCun1|scaffold_177203 (169633-169515) | |
| 180-365, gnl|panTro1|chr15 (49693842-49693959) | |
| 180-365, gnl|rheMac2|chr7 (113793893-113794010) | |
| 180-365, gnl|rn3|chr6 (92147768-92147885) | |
| 180-365, gnl|tetNig1|chr10 (11273998-11273875) | |
| 180-365, gnl|xenTro1|scaffold_341 (863771-863888) | |
| 613-813, gnl|bosTau2|chr10 (29128434-29128231) | |
| 613-813, gnl|canFam2|chr8 (30116274-30116523) | |
| 613-813, gnl|dasNov1|scaffold_8824 (13860-14128) | |
| 613-813, gnl|galGal2|chr5 (54597984-54598238) | |
| 613-813, gnl|hg17|chr14 (50265962-50266204) | |
| 613-813, gnl|Hg17|chr14 (50266193-50265990) | |
| 613-813, gnl|loxAfr1|scaffold_3115 (5354-5084) | |
| 613-813, gnl|mm7|chr12 (67961809-67962036) | |
| 613-813, gnl|Mm7|chr12 (67962025-67961825) | |
| 613-813, gnl|oryCun1|scaffold_186612 (10975-11232) | |
| 613-813, gnl|panTro1|chr15 (49684087-49684329) | |
| 613-813, gnl|rheMac2|chr7 (113783767-113784023) | |
| 613-813, gnl|rn3|chr6 (92140706-92140953) | |
| 613-813, gnl|xenTro1|scaffold_341 (856415-856612) | |
| 924-1441, gnl|bosTau2|chr10 (29122510-29121999) | |
| 924-1441, gnl|Hg17|chr14 (50260143-50259659) | |
| 924-1441, gnl|Mm7|chr12 (67955951-67955453) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| lin (0.291206) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| lin (0.291206) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| ldo (0.0970026) |