Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M15.3

Sequence:


               
               ATGCTGTCATCGTGGCCACCATGGCGGTGGAGATCGCGCCTCACTTTGCTGTGAACCACT
TCACGCTGGGCAATGTCTATGTGGCAATGGAGGAGTTTGAAAAGGCACTGGTGTGGTACG
AATCTACACTGAAGCTGCAGCCCGAGTTTGTCCCAGCCAAGAACCGCATCCAGACCATCC
AGTGTCACTTAATGCTGAAGAAGGGACGGCGCTCTCCTTAGCTCACCCCTCCCTTCTCTC
CCGTCTCTCTCTCTTTTCTCATGCTCTTCAAAAAAAGAATAAGAAACCAATCACTGTCAG
TATCTACTTTTAATGATGTGTGTGAAAATAACTGAATTAAGTCATATAACAGGACTTTTA
CATATGTGGGAATTGGTTTAAGTTCCTTCTTTCCCCCAGCCAACCTCAGAAACATAAATT
TCTTAAAAGGAAAATGCAGCTTAAAGATATTCTGTAAATACTGAGCCAAGACACTTCTGG
AGCTGTGCTCTGTCTCCGAGACCTCGTTGCCTTTAGGGCTTTTCTCCTCTTTGGCAGAGG
ACGAAACCGCATTGCACGTTCTCTGCTTCCTGTCGTAGCCTCTGTGGTCGGTGGAAATGC
AAAGCCTGTCTGGTGCCCGGGCGTGCGGAGCACTGTCCTGCGCTCTGTCCGCTAGATCTG
CTGCCCCTTGGTCCTGTCCGTCCCACGCTGCTCGTTCCAAACTCTCAGAGGTAGTTTGCG
GGGGAGGAAGGGGAAATGATTTTAAAAACAAAATACTTACAACAGAAACTCTTAGGATCA
CCTGACCTTTGTGATGTTATTTATGTTGGGGAGGGAGGGGGGCTGAGAAGGGGAAATCAG
CAATGTACAACATCTGTATCATTTGTACTTTAATTACAAGTCACAAGGAACCAATAAGTT
GAAATCCTATATAACAGGTTTATATATATAGAATATGTATATTTGAAGCCCTCTACAGAC
TGAGTCTGTGTTTTACTAATTCTTTGTTCACTGTGTTACCCATCTTGGAAAAAGGCGTGA
GTGTCCGCTCGCTCTCTCTGAGGCCTTCAAACGTAGCCCCTCGGGAGAGTGATGAGCCGG
GGTCGAGTGTTTCCGTACAGTGCTTATACCTCTGGTCCCAGGAGAGTCAGAAACTCCAGA
CTTTTGGGAATCTTCAAGGGCACATACTGAGGACAAAAATAAAAGTTGTTTATGAAGAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGTCATCGTGGCCACCATGGCGGTGGAGATCGCGCCTCACTTTGCTGTGAACCACT
TCACGCTGGGCAATGTCTATGTGGCAATGGAGGAGTTTGAAAAGGCACTGGTGTGGTACG
AATCTACACTGAAGCTGCAGCCCGAGTTTGTCCCAGCCAAGAACCGCATCCAGACCATCC
AGTGTCACTTAATGCTGAAGAAGGGACGGCGCTCTCCTTAGCTCACCCCTCCCTTCTCTC
CCGTCTCTCTCTCTTTTCTCATGCTCTTCAAAAAAAGAATAAGAAACCAATCACTGTCAG
TATCTACTTTTAATGATGTGTGTGAAAATAACTGAATTAAGTCATATAACAGGACTTTTA
CATATGTGGGAATTGGTTTAAGTTCCTTCTTTCCCCCAGCCAACCTCAGAAACATAAATT
TCTTAAAAGGAAAATGCAGCTTAAAGATATTCTGTAAATACTGAGCCAAGACACTTCTGG
AGCTGTGCTCTGTCTCCGAGACCTCGTTGCCTTTAGGGCTTTTCTCCTCTTTGGCAGAGG
ACGAAACCGCATTGCACGTTCTCTGCTTCCTGTCGTAGCCTCTGTGGTCGGTGGAAATGC
AAAGCCTGTCTGGTGCCCGGGCGTGCGGAGCACTGTCCTGCGCTCTGTCCGCTAGATCTG
CTGCCCCTTGGTCCTGTCCGTCCCACGCTGCTCGTTCCAAACTCTCAGAGGTAGTTTGCG
GGGGAGGAAGGGGAAATGATTTTAAAAACAAAATACTTACAACAGAAACTCTTAGGATCA
CCTGACCTTTGTGATGTTATTTATGTTGGGGAGGGAGGGGGGCTGAGAAGGGGAAATCAG
CAATGTACAACATCTGTATCATTTGTACTTTAATTACAAGTCACAAGGAACCAATAAGTT
GAAATCCTATATAACAGGTTTATATATATAGAATATGTATATTTGAAGCCCTCTACAGAC
TGAGTCTGTGTTTTACTAATTCTTTGTTCACTGTGTTACCCATCTTGGAAAAAGGCGTGA
GTGTCCGCTCGCTCTCTCTGAGGCCTTCAAACGTAGCCCCTCGGGAGAGTGATGAGCCGG
GGTCGAGTGTTTCCGTACAGTGCTTATACCTCTGGTCCCAGGAGAGTCAGAAACTCCAGA
CTTTTGGGAATCTTCAAGGGCACATACTGAGGACAAAAATAAAAGTTGTTTATGAAGAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               272-526, gnl|bosTau2|chr15 (51628079-51628333)
               

               
               272-526, gnl|Hg17|chr11 (43472077-43472356)
               

               
               272-526, gnl|Mm7|chr2 (94152401-94152169)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-526, gnl|bosTau2|chr15 (51628079-51628333)
               

               
               272-526, gnl|Hg17|chr11 (43472077-43472356)
               

               
               272-526, gnl|Mm7|chr2 (94152401-94152169)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               sin (0.349895)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	272-526, gnl\|bosTau2\|chr15 (51628079-51628333)
	272-526, gnl\|Hg17\|chr11 (43472077-43472356)
	272-526, gnl\|Mm7\|chr2 (94152401-94152169)

	sin (0.349895)
	cte (0.29274)
	nca (0.273748)
	ece (0.229305)
	cut (0.169924)
	nje (0.16592)
	ste (0.135208)
	pla (0.133672)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)