Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M18.3

Sequence:


               
               ATGGCCAGGAGGTGACGGCGGCCAGCACTCCAGTTTCCCCTGTGGTTCCCTGAACACAGT
GTTTATGCCCAGGTTGTACACGTTTTGGAAGGCGGGCCCCCCGCCCTCGGCTCTGACTGC
CCTCCCCCTTGCTGTGCGCTGGGGGGCGTGTGGTTTGTGGCCTTTCCCCTCCGGCCTCTG
GGGCAGCGAGGCCCCGCTGCACCTCCGCCCACGTCAGCAGGGCCGCCCCGTCGGCCAGCA
CACTCCCCCGGCGGGCGTGCCAGCCTGGCCTCGCCTCACGGACTGTCCGGGAAAGGCCGT
TCCCTTCGGTGTTACCGCTTCTGCTCAGACTTTGCAAAAAACGTACCTATAAATATATAA
TTATCAATCACCCCTGTCCTTGAGAAAGTCTTGAATGAATAGAGAATTTATCCCACTGCA
ACATTTGATTGTACGGAGGCGCGCTGTTTCATCAACAGAAGAAGCAGAAAGGCTGTGTGT
GAGTTTTGGGTACTGTGTACCACCTCTGTTATTCTTCTAAAGCCAAGTATTCATGTACTT
AAACCATATTCTATTTAATTGTGTTTGATTTTAAAATATATATATATATATATGAATTAT
ATTTAAAATCGTGTCACCTTTCTGCGTTCAGGGCCTGCGTGGCTCTCCTACTGAGACGCG
TCCATCTTCCACCTGTTTCCATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCCAGGAGGTGACGGCGGCCAGCACTCCAGTTTCCCCTGTGGTTCCCTGAACACAGT
GTTTATGCCCAGGTTGTACACGTTTTGGAAGGCGGGCCCCCCGCCCTCGGCTCTGACTGC
CCTCCCCCTTGCTGTGCGCTGGGGGGCGTGTGGTTTGTGGCCTTTCCCCTCCGGCCTCTG
GGGCAGCGAGGCCCCGCTGCACCTCCGCCCACGTCAGCAGGGCCGCCCCGTCGGCCAGCA
CACTCCCCCGGCGGGCGTGCCAGCCTGGCCTCGCCTCACGGACTGTCCGGGAAAGGCCGT
TCCCTTCGGTGTTACCGCTTCTGCTCAGACTTTGCAAAAAACGTACCTATAAATATATAA
TTATCAATCACCCCTGTCCTTGAGAAAGTCTTGAATGAATAGAGAATTTATCCCACTGCA
ACATTTGATTGTACGGAGGCGCGCTGTTTCATCAACAGAAGAAGCAGAAAGGCTGTGTGT
GAGTTTTGGGTACTGTGTACCACCTCTGTTATTCTTCTAAAGCCAAGTATTCATGTACTT
AAACCATATTCTATTTAATTGTGTTTGATTTTAAAATATATATATATATATATGAATTAT
ATTTAAAATCGTGTCACCTTTCTGCGTTCAGGGCCTGCGTGGCTCTCCTACTGAGACGCG
TCCATCTTCCACCTGTTTCCATTC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               344-683, gnl|bosTau2|chr19 (24321231-24321565)
               

               
               344-683, gnl|Hg17|chr17 (19748925-19748590)
               

               
               344-683, gnl|Mm7|chr11 (61953477-61953154)
               


               
               366-593, gnl|bosTau2|chr14 (2930329-2930553)
               

               
               366-593, gnl|Hg17|chr17 (19748903-19748672)
               

               
               366-593, gnl|Mm7|chr11 (61953455-61953236)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               344-683, gnl|bosTau2|chr19 (24321231-24321565)
               

               
               344-683, gnl|Hg17|chr17 (19748925-19748590)
               

               
               344-683, gnl|Mm7|chr11 (61953477-61953154)
               


               
               366-593, gnl|bosTau2|chr14 (2930329-2930553)
               

               
               366-593, gnl|Hg17|chr17 (19748903-19748672)
               

               
               366-593, gnl|Mm7|chr11 (61953455-61953236)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cbe (0.239234)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               cly (0.120642)

	344-683, gnl\|bosTau2\|chr19 (24321231-24321565)
	344-683, gnl\|Hg17\|chr17 (19748925-19748590)
	344-683, gnl\|Mm7\|chr11 (61953477-61953154)

	366-593, gnl\|bosTau2\|chr14 (2930329-2930553)
	366-593, gnl\|Hg17\|chr17 (19748903-19748672)
	366-593, gnl\|Mm7\|chr11 (61953455-61953236)

	cbe (0.239234)
	col (0.195008)
	ton (0.1755)
	fbs (0.175346)
	cje (0.165235)
	cki (0.165235)
	che (0.136314)
	cly (0.120642)