Non-Coding RNA Search

Ss1.1-Pig4-TMW8036M24.5

Sequence:


               
               GGCACGCATACCCGCGCGGCTGCTTCTGGCGCTGCAGTCCCGACCCGCGCGCCGGGCCCT
GCACGATGCAGCCCCGCCACGGGACGTGCTGCTCTTCGAGCACGAACGAGGCCGCTTTTT
CGCCGTCCTCGGGCTGTTCTGTGCCGGCCAGGGCGTCTTCTGGGCCTCCCTGGCCATTGC
CGCCTTAACCCGCCCCCCGGCCCCGGCTCGGCCTCCGGACACCGAGTCCCCAGACCGTGG
CCGCCTGGACCTACGCTCCGCGCTCTGGCGCTATGGCCTCGCTCTTGGCTGCGGCACTAT
CGGTACCCTGGTACTTAGTGCTGGTCTTCTCTTTTCCCTTCGCTCTGTGCGCTCAGTGAT
GCTACGGGCTGGAGGGAAGCAAGTGACCCTCACCACTCATGCCCCCTTTGGCTTGGGTGC
CCATTTCACTGTTCCCTTGAACCAAGTATCCTGCATGGCCCATCGGGGTGAAGTCCCTGC
TATGTTGCCTCTGAAGGTCAAAGGCCGACGCTTCTACTTCCTCTTGGACAAAGCTGGACA
CTTCCCCAACACAAAACTCTTTGATATTACTGTGGGTGCCTACCGTAGCTTGTGAAGAAA
CCACCTCAGCTCATTCAGGCCTCCCAGAGGGGAATAAAATCTGAAACTTAGGGGCGGGGC
AGCAGTTGGTCACACAGGGGGCCCAGAATTCATTGACAGCAAATAAAAGAGCACTCTTCC
CGAGGGCAGCTACCTGCCAGTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACGCATACCCGCGCGGCTGCTTCTGGCGCTGCAGTCCCGACCCGCGCGCCGGGCCCT
GCACGATGCAGCCCCGCCACGGGACGTGCTGCTCTTCGAGCACGAACGAGGCCGCTTTTT
CGCCGTCCTCGGGCTGTTCTGTGCCGGCCAGGGCGTCTTCTGGGCCTCCCTGGCCATTGC
CGCCTTAACCCGCCCCCCGGCCCCGGCTCGGCCTCCGGACACCGAGTCCCCAGACCGTGG
CCGCCTGGACCTACGCTCCGCGCTCTGGCGCTATGGCCTCGCTCTTGGCTGCGGCACTAT
CGGTACCCTGGTACTTAGTGCTGGTCTTCTCTTTTCCCTTCGCTCTGTGCGCTCAGTGAT
GCTACGGGCTGGAGGGAAGCAAGTGACCCTCACCACTCATGCCCCCTTTGGCTTGGGTGC
CCATTTCACTGTTCCCTTGAACCAAGTATCCTGCATGGCCCATCGGGGTGAAGTCCCTGC
TATGTTGCCTCTGAAGGTCAAAGGCCGACGCTTCTACTTCCTCTTGGACAAAGCTGGACA
CTTCCCCAACACAAAACTCTTTGATATTACTGTGGGTGCCTACCGTAGCTTGTGAAGAAA
CCACCTCAGCTCATTCAGGCCTCCCAGAGGGGAATAAAATCTGAAACTTAGGGGCGGGGC
AGCAGTTGGTCACACAGGGGGCCCAGAATTCATTGACAGCAAATAAAAGAGCACTCTTCC
CGAGGGCAGCTACCTGCCAGTACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14250417|gb|AAH08643.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14250417|gb|AAH08643.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-455, + strand, RNAz p=0.738903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-455, + strand, RNAz p=0.738903

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               297-744, gnl|bosTau2|chr29 (32665884-32666321)
               

               
               297-744, gnl|Hg17|chr11 (62314969-62314374)
               

               
               297-744, gnl|Mm7|chr19 (8452204-8452615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-744, gnl|bosTau2|chr29 (32665884-32666321)
               

               
               297-744, gnl|Hg17|chr11 (62314969-62314374)
               

               
               297-744, gnl|Mm7|chr19 (8452204-8452615)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               nco (0.646935)
               

               
               nms (0.427716)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.646935)
               

               
               nms (0.427716)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	297-744, gnl\|bosTau2\|chr29 (32665884-32666321)
	297-744, gnl\|Hg17\|chr11 (62314969-62314374)
	297-744, gnl\|Mm7\|chr19 (8452204-8452615)

	nco (0.646935)
	nms (0.427716)
	ill (0.351185)
	lnt (0.284616)
	hlv (0.278513)
	cov (0.264306)
	pgl (0.236967)
	col (0.195008)
	nep (0.183925)
	sto (0.179824)
	fty (0.17584)
	eye (0.170503)
	csp (0.161186)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)