Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N03.3

Sequence:


               
               GGACCTCCCAGCTCAGAAGGTCCAGGCTTAGTCACACCTGGGAAGAAACCTGTTCCCCCG
GGCAGATGCATCACGCACACTGGAGGTTCCTGGCCCCTCTCATCCCATGCTAGCTTATTT
CTGTCCATTTCCATCTCAACCTAACAAGGAACTGTCCCTCAGTCATCACTTTGTTGCTTC
AAACTCACCATTTTGTCACTTACATTTGCCATCTTCACCATCTGATAACTAGTGATGGTT
CTGGTTGCTCCCCAATGGGGCCAAGACTTTTTCTCATATGAAAAGTCTCTGGGGAACCCA
GATTCTTTTCCGCTAAGGCTTTGCTGAGCACACTGCAGTTCTGTTTTGCCCAGTAGTGCC
ATGGCGGGTTCAACCATCCAGTGTCCTGAAAAGTGGAAGTACCCAGCCGCACCGGAGCTT
GGAGGACCGCGGCAGCTCAGTCCCCTGAGTTCCTCGAGGCGGCTGTTGGCCGTCACCATC
CTGTTAGACAGAAAGAAGGGCTGTAAGCCCCAAGCCCCAGTTAGTTCACCTTGTCATTTG
GAGATGTCCTACTCTGATCATATGCTATCAGGTTTTATTTCCAGGAAATTTAGTTGCTTT
TTTTCTGCATGAAGGAGAAACATCATGGTGCCACATGCTTTAAAGCAATTGAAATGAGAG
ATATAAGGGGAAAATGCAAACACCATATCCGACCTGCCTAATGTAGACTTTATTAGATCA
ATGTACCTAACCTAATATGATGTATTATTTTGTAGCATCTCAAACTTTGTAAATAAATAC
CATTATTTTTATATGGAAATTTTATAGAAGAGCTATTTCTGTATACTTAATTATTCCTGG
ATTTTCTGAATTGCTTCCAATAGGTAATGGACAAGCCCTAATCTGTGTTTCTGGTAAGGA
TGGTTCAAGGACCACCCACGGCATAAATGACGGGGGGGAGGGAGAGTTTCTAAATTTTCC
ATCCCTAGGACCCACCACAGCGGCTCACTCTAAAGCTCTGAGGGTTGGGCCTGGGAAGCT
GTATTTTTAATAAACTGAGTGATGGTTTTTGCCCATTAGTGTTGTACCTTTGTCCATCAC
GTAAGATTAAAAGAAGGAAAGAATAAGCATTTGAAATTGTACTTGAGGAAAAAATGTTAT
CAGACTGTTCTATGATTTGAATGAGATGTACTATATAGAAAAAATAAATAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCCCAGCTCAGAAGGTCCAGGCTTAGTCACACCTGGGAAGAAACCTGTTCCCCCG
GGCAGATGCATCACGCACACTGGAGGTTCCTGGCCCCTCTCATCCCATGCTAGCTTATTT
CTGTCCATTTCCATCTCAACCTAACAAGGAACTGTCCCTCAGTCATCACTTTGTTGCTTC
AAACTCACCATTTTGTCACTTACATTTGCCATCTTCACCATCTGATAACTAGTGATGGTT
CTGGTTGCTCCCCAATGGGGCCAAGACTTTTTCTCATATGAAAAGTCTCTGGGGAACCCA
GATTCTTTTCCGCTAAGGCTTTGCTGAGCACACTGCAGTTCTGTTTTGCCCAGTAGTGCC
ATGGCGGGTTCAACCATCCAGTGTCCTGAAAAGTGGAAGTACCCAGCCGCACCGGAGCTT
GGAGGACCGCGGCAGCTCAGTCCCCTGAGTTCCTCGAGGCGGCTGTTGGCCGTCACCATC
CTGTTAGACAGAAAGAAGGGCTGTAAGCCCCAAGCCCCAGTTAGTTCACCTTGTCATTTG
GAGATGTCCTACTCTGATCATATGCTATCAGGTTTTATTTCCAGGAAATTTAGTTGCTTT
TTTTCTGCATGAAGGAGAAACATCATGGTGCCACATGCTTTAAAGCAATTGAAATGAGAG
ATATAAGGGGAAAATGCAAACACCATATCCGACCTGCCTAATGTAGACTTTATTAGATCA
ATGTACCTAACCTAATATGATGTATTATTTTGTAGCATCTCAAACTTTGTAAATAAATAC
CATTATTTTTATATGGAAATTTTATAGAAGAGCTATTTCTGTATACTTAATTATTCCTGG
ATTTTCTGAATTGCTTCCAATAGGTAATGGACAAGCCCTAATCTGTGTTTCTGGTAAGGA
TGGTTCAAGGACCACCCACGGCATAAATGACGGGGGGGAGGGAGAGTTTCTAAATTTTCC
ATCCCTAGGACCCACCACAGCGGCTCACTCTAAAGCTCTGAGGGTTGGGCCTGGGAAGCT
GTATTTTTAATAAACTGAGTGATGGTTTTTGCCCATTAGTGTTGTACCTTTGTCCATCAC
GTAAGATTAAAAGAAGGAAAGAATAAGCATTTGAAATTGTACTTGAGGAAAAAATGTTAT
CAGACTGTTCTATGATTTGAATGAGATGTACTATATAGAAAAAATAAATAATTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               170-1009, gnl|bosTau2|chr1 (79237443-79236596)
               

               
               170-1009, gnl|Hg17|chr3 (143147332-143146160)
               

               
               170-1009, gnl|Mm7|chr9 (95963958-95964739)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-1009, gnl|bosTau2|chr1 (79237443-79236596)
               

               
               170-1009, gnl|Hg17|chr3 (143147332-143146160)
               

               
               170-1009, gnl|Mm7|chr9 (95963958-95964739)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               cmu (0.55918)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	170-1009, gnl\|bosTau2\|chr1 (79237443-79236596)
	170-1009, gnl\|Hg17\|chr3 (143147332-143146160)
	170-1009, gnl\|Mm7\|chr9 (95963958-95964739)

	cmu (0.55918)
	sto (0.359648)
	cki (0.330469)
	hea (0.204499)
	aor (0.195274)
	cje (0.165235)
	nco (0.161734)
	che (0.136314)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	nbm (0.0993246)
	ldo (0.0970026)