Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N04.5

Sequence:


               
               TTTTTTTTTTTTTTTCAGATCGAAAGTCTTTTATTATTTTTCTTCTCAAATATAAAATCA
CTCTTTCTCCTGGCAGCTCACTAACCCCAGGGAGAAAATCAAGAATAAGAATCACATTGC
TCAAAAGAATAGGCCCATTCCTGCCTCTCGCCTCATGCTGCCCTCTTGTCCCACCTGGGA
GGGCAAAGGGCAGAAAATCATGACCTCAAGGTTCTCAGGTAGCTGGCTGAGGCAAAATGC
TGGGCTCCCCCCCATAAGCTGGGGGAATCCAGAGTGGATTAAGCCCTGATTGGCTCGGCA
GATGGTAGGATCCTGAGATCCATCAGTGTTTGTCAGTGGGACGCATGTTCAGGGACGTGA
GGCGTCCCAGGGGTCCACGGCGAGCGTTGGTGGCCAGCCGCTGCTGTGCCAGGAACGACT
GGGCATGGGCAGGTGCCCGCTCTTCCCCAGCTCGCTGCTGCAGAGCCATACCCATATTAT
ACCAGGCACTGATGAGCAGCTTTTCCTCCTGCTCCCGCTGACTTCGACTCTTCTCAAAGT
CCATCTCCAGGTGCCGAATTCGGACGTCCCGCTCCCGGAGCTGTGTCCTCAGGGAATGGA
GTTCAGGGGGAGCCCCCCCAGGTGGCCGCTGCTTGGGTTCCAGGGTCTGCATGACCATAC
GGGCTCTGTCCACGTAGCGGCGGTACCGATCCTCCATAGCCCTCAAGTCCGCGTCCTTCT
TCTGCAGGCTGTGCTGCAGCTCCTCAATGCGCCGGGCTGTGTTGCTGTCGGCCGGAGGCT
CTAGCTCCTCGATGTACTCGCGCTTCCGCTGCAGCTCCAGCTCCGCCTCATGCAGCTTCT
GCAGATGTTCCTCCAGCTTTCTCTTCAGCAGGGTTGAGTCCTCAGTCTTGCCCCCCTGCT
CCTGCAGGGCCTTCTGCAGGTCCTCCACCTGGGCCCGCAGCTCCGATAGCTGCTGCTGGT
TCAGCCGGTGCTGAGTCTCCAGGCCGTGGCGCGCGCGGTTGGCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTCAGATCGAAAGTCTTTTATTATTTTTCTTCTCAAATATAAAATCA
CTCTTTCTCCTGGCAGCTCACTAACCCCAGGGAGAAAATCAAGAATAAGAATCACATTGC
TCAAAAGAATAGGCCCATTCCTGCCTCTCGCCTCATGCTGCCCTCTTGTCCCACCTGGGA
GGGCAAAGGGCAGAAAATCATGACCTCAAGGTTCTCAGGTAGCTGGCTGAGGCAAAATGC
TGGGCTCCCCCCCATAAGCTGGGGGAATCCAGAGTGGATTAAGCCCTGATTGGCTCGGCA
GATGGTAGGATCCTGAGATCCATCAGTGTTTGTCAGTGGGACGCATGTTCAGGGACGTGA
GGCGTCCCAGGGGTCCACGGCGAGCGTTGGTGGCCAGCCGCTGCTGTGCCAGGAACGACT
GGGCATGGGCAGGTGCCCGCTCTTCCCCAGCTCGCTGCTGCAGAGCCATACCCATATTAT
ACCAGGCACTGATGAGCAGCTTTTCCTCCTGCTCCCGCTGACTTCGACTCTTCTCAAAGT
CCATCTCCAGGTGCCGAATTCGGACGTCCCGCTCCCGGAGCTGTGTCCTCAGGGAATGGA
GTTCAGGGGGAGCCCCCCCAGGTGGCCGCTGCTTGGGTTCCAGGGTCTGCATGACCATAC
GGGCTCTGTCCACGTAGCGGCGGTACCGATCCTCCATAGCCCTCAAGTCCGCGTCCTTCT
TCTGCAGGCTGTGCTGCAGCTCCTCAATGCGCCGGGCTGTGTTGCTGTCGGCCGGAGGCT
CTAGCTCCTCGATGTACTCGCGCTTCCGCTGCAGCTCCAGCTCCGCCTCATGCAGCTTCT
GCAGATGTTCCTCCAGCTTTCTCTTCAGCAGGGTTGAGTCCTCAGTCTTGCCCCCCTGCT
CCTGCAGGGCCTTCTGCAGGTCCTCCACCTGGGCCCGCAGCTCCGATAGCTGCTGCTGGT
TCAGCCGGTGCTGAGTCTCCAGGCCGTGGCGCGCGCGGTTGGCCTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883223|ref|XP_591651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883223|ref|XP_591651.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-331, - strand, RNAz p=0.923621

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-331, - strand, RNAz p=0.923621

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC012443, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC012443, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-473, gnl|bosTau2|chr7 (8459775-8460219)
               

               
               15-473, gnl|Hg17|chr19 (12734817-12735246)
               

               
               15-473, gnl|Mm7|chr8 (83591636-83591239)
               


               
               545-663, gnl|bosTau2|chr7 (8460461-8460578)
               

               
               545-663, gnl|Hg17|chr19 (12735482-12735599)
               

               
               545-663, gnl|Mm7|chr8 (83590989-83590419)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-473, gnl|bosTau2|chr7 (8459775-8460219)
               

               
               15-473, gnl|Hg17|chr19 (12734817-12735246)
               

               
               15-473, gnl|Mm7|chr8 (83591636-83591239)
               


               
               545-663, gnl|bosTau2|chr7 (8460461-8460578)
               

               
               545-663, gnl|Hg17|chr19 (12735482-12735599)
               

               
               545-663, gnl|Mm7|chr8 (83590989-83590419)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cje (0.330469)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cty (0.10408)

	15-473, gnl\|bosTau2\|chr7 (8459775-8460219)
	15-473, gnl\|Hg17\|chr19 (12734817-12735246)
	15-473, gnl\|Mm7\|chr8 (83591636-83591239)

	545-663, gnl\|bosTau2\|chr7 (8460461-8460578)
	545-663, gnl\|Hg17\|chr19 (12735482-12735599)
	545-663, gnl\|Mm7\|chr8 (83590989-83590419)