Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N05.3

Sequence:


               
               TGTATGATACTCATTTACAAGCCAATATATAATTAACTACACAAATAATTTTAAATATAA
TCAATAATAAAGACTTCTGTGGATGGTAGTGTTTAATACATTTTATATTTTGTATAGTGA
TGTCAGGCCTCTTGTTTTCTTAAAATCAGCGGCTACTCAGCTTCATTCTTAGCATTATTT
TGTCCTTTGCACCAGTACTTTTCCGTGCACGCTTTCTATGATCTGTGTGGAAACGCATCA
CCAACTGTGCAGCTTGAAACTTCAACTTGTTATTCAAATAAATATTTAATTTTTTTTATT
GCTCTTGTATAATCAGATGCCCTTTTTAGTATTATTTTAGAAGCATTGGGAGGGTTTTGG
CTAAAATACAATTTATTGGGGGAAAACTAGATTTTAGTTTTATAAAACTTTTAAGTCTTT
CATGGGACCTATATTTTCTTGAATTAAATTTTGTAGCTCTAGAACAAATAGGTGACCTAA
AAAGGTGTTTATCTGTGTTACTTAAAAACAGAGGCTTCCTTATATTTTCACCTACTAAGC
GTCTAGGAGGGACCCCGTCCTCAAGCACAAGTGCACTGACTTCTCAAGTGTCCACATTCG
CTGGCGTCGCCCATTCTGAACGCTTCCCGTTTGCAGGCACCAAAGTGGAGAGAACAGCCT
GACTTCTTGCCAAAGGAAACCACCACTTGGGAGACCAAGGCCCTGAAGGGCTTCTGCCTC
GGATGCATCCTCTTCACACGTGTAACTGGAACTCAAGCCCCAAGCTGAGTGCTCGGGACT
GAGGGCTGCCGCAGAACTGAAATTCATTGGACACTTCACAGGGATTGATACCCATGTTAG
TCTCAAAAGCTGCAAACCAGTGGTCTGCAAAATAAAATGTGTTGGAAACCTCTGAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATGATACTCATTTACAAGCCAATATATAATTAACTACACAAATAATTTTAAATATAA
TCAATAATAAAGACTTCTGTGGATGGTAGTGTTTAATACATTTTATATTTTGTATAGTGA
TGTCAGGCCTCTTGTTTTCTTAAAATCAGCGGCTACTCAGCTTCATTCTTAGCATTATTT
TGTCCTTTGCACCAGTACTTTTCCGTGCACGCTTTCTATGATCTGTGTGGAAACGCATCA
CCAACTGTGCAGCTTGAAACTTCAACTTGTTATTCAAATAAATATTTAATTTTTTTTATT
GCTCTTGTATAATCAGATGCCCTTTTTAGTATTATTTTAGAAGCATTGGGAGGGTTTTGG
CTAAAATACAATTTATTGGGGGAAAACTAGATTTTAGTTTTATAAAACTTTTAAGTCTTT
CATGGGACCTATATTTTCTTGAATTAAATTTTGTAGCTCTAGAACAAATAGGTGACCTAA
AAAGGTGTTTATCTGTGTTACTTAAAAACAGAGGCTTCCTTATATTTTCACCTACTAAGC
GTCTAGGAGGGACCCCGTCCTCAAGCACAAGTGCACTGACTTCTCAAGTGTCCACATTCG
CTGGCGTCGCCCATTCTGAACGCTTCCCGTTTGCAGGCACCAAAGTGGAGAGAACAGCCT
GACTTCTTGCCAAAGGAAACCACCACTTGGGAGACCAAGGCCCTGAAGGGCTTCTGCCTC
GGATGCATCCTCTTCACACGTGTAACTGGAACTCAAGCCCCAAGCTGAGTGCTCGGGACT
GAGGGCTGCCGCAGAACTGAAATTCATTGGACACTTCACAGGGATTGATACCCATGTTAG
TCTCAAAAGCTGCAAACCAGTGGTCTGCAAAATAAAATGTGTTGGAAACCTCTGAGTGAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-736, gnl|bosTau2|chr13 (15341227-15341952)
               

               
               1-736, gnl|Hg17|chr10 (13400384-13399633)
               

               
               1-736, gnl|Mm7|chr2 (4824816-4825584)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-736, gnl|bosTau2|chr13 (15341227-15341952)
               

               
               1-736, gnl|Hg17|chr10 (13400384-13399633)
               

               
               1-736, gnl|Mm7|chr2 (4824816-4825584)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               sme (0.305437)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-736, gnl\|bosTau2\|chr13 (15341227-15341952)
	1-736, gnl\|Hg17\|chr10 (13400384-13399633)
	1-736, gnl\|Mm7\|chr2 (4824816-4825584)

	sme (0.305437)
	nep (0.183925)
	mcp (0.170648)
	csk (0.140746)
	thg (0.126791)
	bla (0.124347)
	nbm (0.0993246)
	eje (0.0988338)