Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N05.5

Sequence:


               
               GTCTACACATCTGGTGACCTTAGGTCGATTTGTGAGTGGATGCAATTAATAAAATAAAAT
CCATTGCCTTTTTTTCCTGTTACATTAACTGAAGATGCACCTAATCTTGAGGCAGCTTCT
GAGTTGAGAATTATATTGTTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTA
TCTCTTGCCGAGTAGGCTCTTTTTAAAGGTGCTTTCACGTAGCACAGACATTATGCGTCG
TAGTGTTGAATAGCAGTCTGTGTCTTTTCAGTTTATGTATATTTATCATTATCGGTCTGA
TCCTTTTTGAAGTGTCTGGAATGATATTCTGGAAGGACAGGATTGGTGACTGACACAAGG
GTACCCCAGTAGTGAGAGGGTTGCATGATTCCTTCGAGTCTTCTAATGCAAGAGCATCTC
TGACCCAGGCCGTTTCCCAAGAGTGCATTCAGTTAAACAAGGCAAGTGCTCAACTCTGCA
TGGAAAGCACTTTGAAAACAAAAAAGAAATGTTATTTCTTTTTTTGTTAGCCTTCTTAAT
ACTTAACAGTAATATCATTAACTGTTTTCTTTACAATGGACACTTTTTGCAGTGTAATTA
GATGTTTGGTAGTGCAGCAAAGAATTGCCCTCTGAAAGGGGGGGGGTCCGTGTATGATAC
TCATTTACAAGCCAATATATAATTAACTACACAAATAATTTTAAATATAATCAATAATAA
AGACTTCTGTGGATGGTAGTGTTTAATACATTTTATATTTTGTATAGTGATGTCAGGCCC
TCTGTTTTCTTAAAATCAGCAGCTACTCAGCTTCATTCTTAGCATTATTTTGTCCTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTACACATCTGGTGACCTTAGGTCGATTTGTGAGTGGATGCAATTAATAAAATAAAAT
CCATTGCCTTTTTTTCCTGTTACATTAACTGAAGATGCACCTAATCTTGAGGCAGCTTCT
GAGTTGAGAATTATATTGTTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTA
TCTCTTGCCGAGTAGGCTCTTTTTAAAGGTGCTTTCACGTAGCACAGACATTATGCGTCG
TAGTGTTGAATAGCAGTCTGTGTCTTTTCAGTTTATGTATATTTATCATTATCGGTCTGA
TCCTTTTTGAAGTGTCTGGAATGATATTCTGGAAGGACAGGATTGGTGACTGACACAAGG
GTACCCCAGTAGTGAGAGGGTTGCATGATTCCTTCGAGTCTTCTAATGCAAGAGCATCTC
TGACCCAGGCCGTTTCCCAAGAGTGCATTCAGTTAAACAAGGCAAGTGCTCAACTCTGCA
TGGAAAGCACTTTGAAAACAAAAAAGAAATGTTATTTCTTTTTTTGTTAGCCTTCTTAAT
ACTTAACAGTAATATCATTAACTGTTTTCTTTACAATGGACACTTTTTGCAGTGTAATTA
GATGTTTGGTAGTGCAGCAAAGAATTGCCCTCTGAAAGGGGGGGGGTCCGTGTATGATAC
TCATTTACAAGCCAATATATAATTAACTACACAAATAATTTTAAATATAATCAATAATAA
AGACTTCTGTGGATGGTAGTGTTTAATACATTTTATATTTTGTATAGTGATGTCAGGCCC
TCTGTTTTCTTAAAATCAGCAGCTACTCAGCTTCATTCTTAGCATTATTTTGTCCTTTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               79-198, - strand, RNAz p=0.635874
               

               
               80-274, + strand, RNAz p=0.960792
               

               
               467-574, - strand, RNAz p=0.842057

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-198, - strand, RNAz p=0.635874
               

               
               80-274, + strand, RNAz p=0.960792
               

               
               467-574, - strand, RNAz p=0.842057

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-840, gnl|bosTau2|chr13 (15340580-15341420)
               

               
               1-840, gnl|canFam2|chr2 (26014366-26015161)
               

               
               1-840, gnl|dasNov1|scaffold_215162 (1651-919)
               

               
               1-840, gnl|echTel1|scaffold_284257 (37906-37084)
               

               
               1-840, gnl|galGal2|chrUn (18649517-18648727)
               

               
               1-840, gnl|Hg17|chr10 (13401053-13400196)
               

               
               1-840, gnl|hg17|chr17 (44969130-44969942)
               

               
               1-840, gnl|loxAfr1|scaffold_24028 (72509-73321)
               

               
               1-840, gnl|mm7|chr2 (4824348-4825115)
               

               
               1-840, gnl|Mm7|chr2 (4824162-4825001)
               

               
               1-840, gnl|monDom2|scaffold_30 (12300915-12300091)
               

               
               1-840, gnl|oryCun1|scaffold_123381 (725-1525)
               

               
               1-840, gnl|panTro1|chr19_random (43862921-43863733)
               

               
               1-840, gnl|rheMac2|chr9 (13583467-13582628)
               

               
               1-840, gnl|rn3|chr17 (84457407-84456699)
               

               
               1-840, gnl|xenTro1|scaffold_200 (435869-435034)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr13 (15340580-15341420)
               

               
               1-840, gnl|canFam2|chr2 (26014366-26015161)
               

               
               1-840, gnl|dasNov1|scaffold_215162 (1651-919)
               

               
               1-840, gnl|echTel1|scaffold_284257 (37906-37084)
               

               
               1-840, gnl|galGal2|chrUn (18649517-18648727)
               

               
               1-840, gnl|Hg17|chr10 (13401053-13400196)
               

               
               1-840, gnl|hg17|chr17 (44969130-44969942)
               

               
               1-840, gnl|loxAfr1|scaffold_24028 (72509-73321)
               

               
               1-840, gnl|mm7|chr2 (4824348-4825115)
               

               
               1-840, gnl|Mm7|chr2 (4824162-4825001)
               

               
               1-840, gnl|monDom2|scaffold_30 (12300915-12300091)
               

               
               1-840, gnl|oryCun1|scaffold_123381 (725-1525)
               

               
               1-840, gnl|panTro1|chr19_random (43862921-43863733)
               

               
               1-840, gnl|rheMac2|chr9 (13583467-13582628)
               

               
               1-840, gnl|rn3|chr17 (84457407-84456699)
               

               
               1-840, gnl|xenTro1|scaffold_200 (435869-435034)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               ski (0.146735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ski (0.146735)

	79-198, - strand, RNAz p=0.635874
	80-274, + strand, RNAz p=0.960792
	467-574, - strand, RNAz p=0.842057

	1-840, gnl\|bosTau2\|chr13 (15340580-15341420)
	1-840, gnl\|canFam2\|chr2 (26014366-26015161)
	1-840, gnl\|dasNov1\|scaffold_215162 (1651-919)
	1-840, gnl\|echTel1\|scaffold_284257 (37906-37084)
	1-840, gnl\|galGal2\|chrUn (18649517-18648727)
	1-840, gnl\|Hg17\|chr10 (13401053-13400196)
	1-840, gnl\|hg17\|chr17 (44969130-44969942)
	1-840, gnl\|loxAfr1\|scaffold_24028 (72509-73321)
	1-840, gnl\|mm7\|chr2 (4824348-4825115)
	1-840, gnl\|Mm7\|chr2 (4824162-4825001)
	1-840, gnl\|monDom2\|scaffold_30 (12300915-12300091)
	1-840, gnl\|oryCun1\|scaffold_123381 (725-1525)
	1-840, gnl\|panTro1\|chr19_random (43862921-43863733)
	1-840, gnl\|rheMac2\|chr9 (13583467-13582628)
	1-840, gnl\|rn3\|chr17 (84457407-84456699)
	1-840, gnl\|xenTro1\|scaffold_200 (435869-435034)