Ss1.1-Pig4-TMW8036N07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACGGAGGTAGTCTTGTCCTGGGTGGAATTGAACCAACTTTGTACAAAGGAGACATCTG GTATACCCCTATTAAGGAGGAGTGGTACTATCAGATAGAAATTCTGAAATTGGAAATCGG AGGCCAGAGCCTTAATCTGGACTGCAGAGAGTATAACGCCGACAAAGCCATCGTGGACAG CGGTACCACACTCCTGCGCCTGCCTCAGAAGGTGTTTAATGCCGTGGTGGAGGCTGTGGC CCGCACGTCTCTGATTCCAGAATTCTCTGACGGTTTCTGGACTGGGTCCCAGCTGGCCTG CTGGACGAATTCTGAGACACCTTGGTCTTACTTCCCTAAGATTTCCATCTACCTGCGAGA CGAGAACTCCAGCAGGTCATTCCGCATAACTATCCTGCCTCAGCTTTACATCCAGCCCAT GATGGGGGCTGGCCTGAATTATGAATGTTACCGGTTTGGCATTTCACCTTCCACAAACGC GCTGGTGATTGGTGCTACCGTGATGGAGGGCTTCTACGTGGTCTTTGACAGAGCTCGGAA GAGGGTAGGCTTCGCAGCCAGCCCCTGTGCCGAAATTGCAGGTGCTCCAGTGTCAGAAAT TTCGGGGCCTTTCTCAACAGAAGATGTAGCCAGCAACTGCGTCCCAGCCCTGCCTGTGAA TGAGCCCATTTTGTGGATTGTCTCGTATACTCTCATGAGCGTGTGTGGAATCATCCTTCT TATCTTAATCATCCTGCTGCTACTTCCACTCCGATGTCGGCATCTCCCCCGGGACCCTGA GGTTGTCAATGATGAGTCCTCTCTCGTCCGGCACCGCTGGAAATGAAGAGAAAAGCCTGA ACTCCAATGACCTTGAACTCCACAATCTAGACAGTTGAATTCAAGTGCAGCAGGCAGGGG TTAGAAGGCAAGGTTTCTTCCTGTGTCCCTTAGTCTTAAATCTCTGTTCCACTCCTGATG CCTTCCAGATGCACTGTATTTTGATTCTTGATTTTAAAGCTTCCTCCTTCTCCCCTACTT CCAAAGAAAATGATAATAACAATAATAATAATAAAAAGAAAGCACCTCATTTGTAATCAA AACAGAGTGAATTGGGCTTCAGGCTTTACGTAGCTGGTTATGCCAAACTAGCTAGGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACGGAGGTAGTCTTGTCCTGGGTGGAATTGAACCAACTTTGTACAAAGGAGACATCTG GTATACCCCTATTAAGGAGGAGTGGTACTATCAGATAGAAATTCTGAAATTGGAAATCGG AGGCCAGAGCCTTAATCTGGACTGCAGAGAGTATAACGCCGACAAAGCCATCGTGGACAG CGGTACCACACTCCTGCGCCTGCCTCAGAAGGTGTTTAATGCCGTGGTGGAGGCTGTGGC CCGCACGTCTCTGATTCCAGAATTCTCTGACGGTTTCTGGACTGGGTCCCAGCTGGCCTG CTGGACGAATTCTGAGACACCTTGGTCTTACTTCCCTAAGATTTCCATCTACCTGCGAGA CGAGAACTCCAGCAGGTCATTCCGCATAACTATCCTGCCTCAGCTTTACATCCAGCCCAT GATGGGGGCTGGCCTGAATTATGAATGTTACCGGTTTGGCATTTCACCTTCCACAAACGC GCTGGTGATTGGTGCTACCGTGATGGAGGGCTTCTACGTGGTCTTTGACAGAGCTCGGAA GAGGGTAGGCTTCGCAGCCAGCCCCTGTGCCGAAATTGCAGGTGCTCCAGTGTCAGAAAT TTCGGGGCCTTTCTCAACAGAAGATGTAGCCAGCAACTGCGTCCCAGCCCTGCCTGTGAA TGAGCCCATTTTGTGGATTGTCTCGTATACTCTCATGAGCGTGTGTGGAATCATCCTTCT TATCTTAATCATCCTGCTGCTACTTCCACTCCGATGTCGGCATCTCCCCCGGGACCCTGA GGTTGTCAATGATGAGTCCTCTCTCGTCCGGCACCGCTGGAAATGAAGAGAAAAGCCTGA ACTCCAATGACCTTGAACTCCACAATCTAGACAGTTGAATTCAAGTGCAGCAGGCAGGGG TTAGAAGGCAAGGTTTCTTCCTGTGTCCCTTAGTCTTAAATCTCTGTTCCACTCCTGATG CCTTCCAGATGCACTGTATTTTGATTCTTGATTTTAAAGCTTCCTCCTTCTCCCCTACTT CCAAAGAAAATGATAATAACAATAATAATAATAAAAAGAAAGCACCTCATTTGTAATCAA AACAGAGTGAATTGGGCTTCAGGCTTTACGTAGCTGGTTATGCCAAACTAGCTAGGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 17-135, + strand, RNAz p=0.602228 | |
| 62-151, - strand, RNAz p=0.588325 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 17-135, + strand, RNAz p=0.602228 | |
| 62-151, - strand, RNAz p=0.588325 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 17-151, gnl|bosTau2|chr1 (93161732-93161866) | |
| 17-151, gnl|canFam2|chr31 (38054469-38054653) | |
| 17-151, gnl|danRer3|chrNA (8148481-8148646) | |
| 17-151, gnl|dasNov1|scaffold_7104 (50748-50633) | |
| 17-151, gnl|echTel1|scaffold_295826 (2645-2830) | |
| 17-151, gnl|fr1|chrUn (334978428-334978569) | |
| 17-151, gnl|galGal2|chr1 (102579048-102579211) | |
| 17-151, gnl|hg17|chr21 (41537146-41537330) | |
| 17-151, gnl|Hg17|chr21 (41537173-41537307) | |
| 17-151, gnl|mm7|chr16 (97794692-97794874) | |
| 17-151, gnl|Mm7|chr16 (97794718-97794852) | |
| 17-151, gnl|monDom2|scaffold_29 (1870352-1870176) | |
| 17-151, gnl|panTro1|chr22 (41581339-41581523) | |
| 17-151, gnl|rheMac2|chr3 (5404257-5404073) | |
| 17-151, gnl|rn3|chr11 (37462636-37462817) | |
| 17-151, gnl|tetNig1|chrUn_random (13392881-13392717) | |
| 17-151, gnl|xenTro1|scaffold_930 (41102-41251) | |
| 401-570, gnl|bosTau2|chr1 (93173289-93173458) | |
| 401-570, gnl|Hg17|chr21 (41550952-41551121) | |
| 401-570, gnl|Mm7|chr16 (97805856-97806025) | |
| 572-1042, gnl|bosTau2|chr1 (93200205-93200663) | |
| 572-1042, gnl|Hg17|chr21 (41569167-41569635) | |
| 572-1042, gnl|Mm7|chr16 (97818010-97818452) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-151, gnl|bosTau2|chr1 (93161732-93161866) | |
| 17-151, gnl|canFam2|chr31 (38054469-38054653) | |
| 17-151, gnl|danRer3|chrNA (8148481-8148646) | |
| 17-151, gnl|dasNov1|scaffold_7104 (50748-50633) | |
| 17-151, gnl|echTel1|scaffold_295826 (2645-2830) | |
| 17-151, gnl|fr1|chrUn (334978428-334978569) | |
| 17-151, gnl|galGal2|chr1 (102579048-102579211) | |
| 17-151, gnl|hg17|chr21 (41537146-41537330) | |
| 17-151, gnl|Hg17|chr21 (41537173-41537307) | |
| 17-151, gnl|mm7|chr16 (97794692-97794874) | |
| 17-151, gnl|Mm7|chr16 (97794718-97794852) | |
| 17-151, gnl|monDom2|scaffold_29 (1870352-1870176) | |
| 17-151, gnl|panTro1|chr22 (41581339-41581523) | |
| 17-151, gnl|rheMac2|chr3 (5404257-5404073) | |
| 17-151, gnl|rn3|chr11 (37462636-37462817) | |
| 17-151, gnl|tetNig1|chrUn_random (13392881-13392717) | |
| 17-151, gnl|xenTro1|scaffold_930 (41102-41251) | |
| 401-570, gnl|bosTau2|chr1 (93173289-93173458) | |
| 401-570, gnl|Hg17|chr21 (41550952-41551121) | |
| 401-570, gnl|Mm7|chr16 (97805856-97806025) | |
| 572-1042, gnl|bosTau2|chr1 (93200205-93200663) | |
| 572-1042, gnl|Hg17|chr21 (41569167-41569635) | |
| 572-1042, gnl|Mm7|chr16 (97818010-97818452) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| amn (0.417711) | |
| jca (0.22792) | |
| col (0.195008) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| jca (0.22792) | |
| col (0.195008) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| spc (0.113366) | |
| jej (0.0989218) |