Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N13.3

Sequence:


               
               TGCGTACAGGTGGCTGCCTTAGCTCCGGGAGCGCGGCGGCTCCGGAAATCCTGCGAGGGG
GACGGTGGGCCCTCGGCCCGGGCGGCTATGGCAGTGGCTACAGTGGCGGCATTTCTGGCC
GCACTGGGTGGGGCCCTGTGGCTGGCGGCCCGACGGTTTGTGGGGCCTAGTGTCCAGCGG
TTGCACCGAGGCGGGGACTCCGGCCTCATGCACGGGAAGACCGTGCTGATCACGGGGGCT
AACAGCGGCCTGGGCCGCGCCACGGCCGCCGAGCTGCTACGCTTGGGGGCGCGAGTGATC
ATGGGCTGCCGGGACCGCGCGCGCGCCGAGGAGGCGGCGGGTCAGCTCCGCCGCGAGCTC
CGCCAGACCGAGGGCCCCGAGGAGGGGCCCAACTCCGGAGGGGCCGGCGAGCTCGTCGTC
CGGGAGTTGGACCTCGCCTCGCTGCGCTCGGTGCGCGCCTTCTGTCAGGAGATGCTCCAG
GAAGAGCCTAGACTGGATGTTCTGATCAATAATGCAGGGATCTTCCAGTGCCCTTACATG
AAGACCGAAGATGGGTTTGAGATGCAGTTTGCAGTGAACCATCTGGGGCACTTCCTACTC
ACCAATCTTCTCCTTGGACTCCTTAAAAGTTCAGCTCCCAGCAGGATTGTGGTAGTTTCT
TCCAAACTTTATAAATATGGAGACATCAACTTTGAAGACTTGAACAGTGAACAAAGCTAT
AATAAAAGCTTCTGTTACAGTCGGAGCAAACTGGCTAACATTCTTTTTACCAGAGAACTA
GCCCGCCGCTTAGAAGGCACAAATGTCACTGTCAACGTATTGCACCCCGGCATCGTGCGG
ACTAACCTGGGGAGGCACATACACATCCCACTCTTAGTCAGGCCACTTTTCAATTTAGTG
TCATGGGCTTTTTTCAAAACTCCAGCAGAAGGGGCCCAGACTTCAGTTTATTTAGCCTCT
TCACCTGAGGTAGAAGGTGTGTCAGGAAAGTACTTTGGGGACTGCAAAGAGGAAGAACTC
TTGCCCAAAGCTATGGATGACTCTGTTGCAAGAAAACTCTGGGATATCAGTGAAGTCATG
GTAGGCATATTAAAATAGGAAGGAGGTGTGGCAGCTATTTATAAAACTGGATCTCAGCTC
TATCTTTGATCAGGAATAGTGTGGGTTGGGCATTTACTACTTGAAAATGCAATTCTAGTT
TTACAATTGTACTGCTGAGAGGTACATAGGGATATTTGAAGTTACTGAAAAGTTATTTTT
TGGAGAACATAAAATTTCAGAAAAATGTTTAAATATGTATAATGAGCATATCAATGAGTG
ATACAAATATGTTTTTAAATTATAATTGAACAAGCATGGATTACAAATATTAAAGAATGC
ACTTACTTAAAACAGACACCTTGAGAAGTTTTTCATATATTTTTGAGTTTCGTGATATGT
TTAAAGTGTTAAATAGTTTAATTATAATACTGGTTTTTGTGTAGAAATAATATGCCTGGT
GTGACTACACAGTGGAATAAATTTACTGATGCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTACAGGTGGCTGCCTTAGCTCCGGGAGCGCGGCGGCTCCGGAAATCCTGCGAGGGG
GACGGTGGGCCCTCGGCCCGGGCGGCTATGGCAGTGGCTACAGTGGCGGCATTTCTGGCC
GCACTGGGTGGGGCCCTGTGGCTGGCGGCCCGACGGTTTGTGGGGCCTAGTGTCCAGCGG
TTGCACCGAGGCGGGGACTCCGGCCTCATGCACGGGAAGACCGTGCTGATCACGGGGGCT
AACAGCGGCCTGGGCCGCGCCACGGCCGCCGAGCTGCTACGCTTGGGGGCGCGAGTGATC
ATGGGCTGCCGGGACCGCGCGCGCGCCGAGGAGGCGGCGGGTCAGCTCCGCCGCGAGCTC
CGCCAGACCGAGGGCCCCGAGGAGGGGCCCAACTCCGGAGGGGCCGGCGAGCTCGTCGTC
CGGGAGTTGGACCTCGCCTCGCTGCGCTCGGTGCGCGCCTTCTGTCAGGAGATGCTCCAG
GAAGAGCCTAGACTGGATGTTCTGATCAATAATGCAGGGATCTTCCAGTGCCCTTACATG
AAGACCGAAGATGGGTTTGAGATGCAGTTTGCAGTGAACCATCTGGGGCACTTCCTACTC
ACCAATCTTCTCCTTGGACTCCTTAAAAGTTCAGCTCCCAGCAGGATTGTGGTAGTTTCT
TCCAAACTTTATAAATATGGAGACATCAACTTTGAAGACTTGAACAGTGAACAAAGCTAT
AATAAAAGCTTCTGTTACAGTCGGAGCAAACTGGCTAACATTCTTTTTACCAGAGAACTA
GCCCGCCGCTTAGAAGGCACAAATGTCACTGTCAACGTATTGCACCCCGGCATCGTGCGG
ACTAACCTGGGGAGGCACATACACATCCCACTCTTAGTCAGGCCACTTTTCAATTTAGTG
TCATGGGCTTTTTTCAAAACTCCAGCAGAAGGGGCCCAGACTTCAGTTTATTTAGCCTCT
TCACCTGAGGTAGAAGGTGTGTCAGGAAAGTACTTTGGGGACTGCAAAGAGGAAGAACTC
TTGCCCAAAGCTATGGATGACTCTGTTGCAAGAAAACTCTGGGATATCAGTGAAGTCATG
GTAGGCATATTAAAATAGGAAGGAGGTGTGGCAGCTATTTATAAAACTGGATCTCAGCTC
TATCTTTGATCAGGAATAGTGTGGGTTGGGCATTTACTACTTGAAAATGCAATTCTAGTT
TTACAATTGTACTGCTGAGAGGTACATAGGGATATTTGAAGTTACTGAAAAGTTATTTTT
TGGAGAACATAAAATTTCAGAAAAATGTTTAAATATGTATAATGAGCATATCAATGAGTG
ATACAAATATGTTTTTAAATTATAATTGAACAAGCATGGATTACAAATATTAAAGAATGC
ACTTACTTAAAACAGACACCTTGAGAAGTTTTTCATATATTTTTGAGTTTCGTGATATGT
TTAAAGTGTTAAATAGTTTAATTATAATACTGGTTTTTGTGTAGAAATAATATGCCTGGT
GTGACTACACAGTGGAATAAATTTACTGATGCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37182145|gb|AAQ88875.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182145|gb|AAQ88875.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               958-1077, + strand, RNAz p=0.735056

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               958-1077, + strand, RNAz p=0.735056

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               479-1511, gnl|bosTau2|chr11 (60534783-60533764)
               

               
               479-1511, gnl|Hg17|chr2 (18658704-18657656)
               

               
               479-1511, gnl|Mm7|chr12 (10430378-10431372)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               479-1511, gnl|bosTau2|chr11 (60534783-60533764)
               

               
               479-1511, gnl|Hg17|chr2 (18658704-18657656)
               

               
               479-1511, gnl|Mm7|chr12 (10430378-10431372)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               isp (0.601504)
               

               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	479-1511, gnl\|bosTau2\|chr11 (60534783-60533764)
	479-1511, gnl\|Hg17\|chr2 (18658704-18657656)
	479-1511, gnl\|Mm7\|chr12 (10430378-10431372)

	isp (0.601504)
	cbe (0.478469)
	tra (0.369276)
	fco (0.314416)
	ova (0.258264)
	mgp (0.230681)
	mas (0.210305)
	col (0.195008)
	sag (0.182715)
	sin (0.174948)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	che (0.136314)
	sug (0.127291)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)