Non-Coding RNA Search

Ss1.1-Pig4-TMW8036N23.5

Sequence:


               
               CCAGTGCACTGACGACGAGAGGCAGCGGCATCATGGAAGCCCCCCGGGGCTGGCTGGTGA
TCATGATCAGTGTGCTGGCCGTATCCCTGGCCTCTTCGGCGGCCCAGGACACGTGCCGAG
ATCTGGACGGGAGGGACGGGGCCGCAGGAAAACCCGGCCGACCCGGGCGGCCAGGCCCCA
AGGGAGAACGAGGAGAGCCGGGAGCCCCTGCCTTTCAGACTGGCATCCGCGGCCTTAAAG
GAGACCAGGGGGAGTCTGGGTCCCCTGGAAAACCTGGCAGAATGGGCTACCCGGGGCCCA
GCGGCCCTCCAGGGCTCCCGGGCCTCCCAGGGTTGAAGGGCATCAAGGGCAACCCGGGAA
ACATCAAGGACCAGCGCCGGCCGGCCTTCTCGGCCGTGCGACAGAATCCTCCGACGAGCG
GCAACGTGGTCATCTTCGATGAGGTCATCACCAACCAGGAGGGCGCGTACAAGAGCCAGC
TGGGCCAGTTCATCTGCGATGTGCCAGGCTACTACTACTTCACCTTCCAGGTGGTGTCCA
AGTGGGACCTCTGCCTGTACATCATGTCCTCTAGGAGAGACCAGGTCCAGCAGTCCTTGG
GCTTCTGTGACTTCAACAGCAAGGGACTCTTCCAGGTGGTGTCTGGGGGCACGGTGCTCC
AGCTCCAGCGGGGAGACAAGGTCTGGATCCAAAGAGACCCCAATAAGGGCCGCATTTACC
AGGGTTCAGAAGCGGACAGCGTCTTCAGCGGCTTCCTCATCTTCCCCTCCACCTGAGCCA
GAAAAAGACCCCCCCTACCCGCCTCCCCACCACGGCCTCTGCTTCCCGCTGTGTGACCCT
GGCCTACTCAGGCCACCTCTGTGGTGGCTATGCTCCACTCTGTAAAGTGGGGGTGCTGTT
GCTTTAGCTGCCTAAAGGGAGATCATTTCTCAAATCTTTTTCTGGAATAAAATACCATGA
GTCCATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTGCACTGACGACGAGAGGCAGCGGCATCATGGAAGCCCCCCGGGGCTGGCTGGTGA
TCATGATCAGTGTGCTGGCCGTATCCCTGGCCTCTTCGGCGGCCCAGGACACGTGCCGAG
ATCTGGACGGGAGGGACGGGGCCGCAGGAAAACCCGGCCGACCCGGGCGGCCAGGCCCCA
AGGGAGAACGAGGAGAGCCGGGAGCCCCTGCCTTTCAGACTGGCATCCGCGGCCTTAAAG
GAGACCAGGGGGAGTCTGGGTCCCCTGGAAAACCTGGCAGAATGGGCTACCCGGGGCCCA
GCGGCCCTCCAGGGCTCCCGGGCCTCCCAGGGTTGAAGGGCATCAAGGGCAACCCGGGAA
ACATCAAGGACCAGCGCCGGCCGGCCTTCTCGGCCGTGCGACAGAATCCTCCGACGAGCG
GCAACGTGGTCATCTTCGATGAGGTCATCACCAACCAGGAGGGCGCGTACAAGAGCCAGC
TGGGCCAGTTCATCTGCGATGTGCCAGGCTACTACTACTTCACCTTCCAGGTGGTGTCCA
AGTGGGACCTCTGCCTGTACATCATGTCCTCTAGGAGAGACCAGGTCCAGCAGTCCTTGG
GCTTCTGTGACTTCAACAGCAAGGGACTCTTCCAGGTGGTGTCTGGGGGCACGGTGCTCC
AGCTCCAGCGGGGAGACAAGGTCTGGATCCAAAGAGACCCCAATAAGGGCCGCATTTACC
AGGGTTCAGAAGCGGACAGCGTCTTCAGCGGCTTCCTCATCTTCCCCTCCACCTGAGCCA
GAAAAAGACCCCCCCTACCCGCCTCCCCACCACGGCCTCTGCTTCCCGCTGTGTGACCCT
GGCCTACTCAGGCCACCTCTGTGGTGGCTATGCTCCACTCTGTAAAGTGGGGGTGCTGTT
GCTTTAGCTGCCTAAAGGGAGATCATTTCTCAAATCTTTTTCTGGAATAAAATACCATGA
GTCCATCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               C1QA_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               C1QA_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-359, - strand, RNAz p=0.996154

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-359, - strand, RNAz p=0.996154

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               201-965, gnl|bosTau2|chr2 (84268956-84268197)
               

               
               201-965, gnl|Hg17|chr1 (22710631-22711396)
               

               
               201-965, gnl|Mm7|chr4 (136275166-136274445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-965, gnl|bosTau2|chr2 (84268956-84268197)
               

               
               201-965, gnl|Hg17|chr1 (22710631-22711396)
               

               
               201-965, gnl|Mm7|chr4 (136275166-136274445)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               csp (5.64152)
               

               
               cly (4.46375)
               

               
               cag (2.57031)
               

               
               cli (1.22249)
               

               
               jca (1.02564)
               

               
               col (0.975039)
               

               
               lnt (0.711541)
               

               
               jej (0.593531)
               

               
               pty (0.570858)
               

               
               cga (0.558191)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cje (0.330469)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (5.64152)
               

               
               cly (4.46375)
               

               
               cag (2.57031)
               

               
               cli (1.22249)
               

               
               jca (1.02564)
               

               
               col (0.975039)
               

               
               lnt (0.711541)
               

               
               jej (0.593531)
               

               
               pty (0.570858)
               

               
               cga (0.558191)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               ton (0.351)
               

               
               med (0.348756)
               

               
               cje (0.330469)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	201-965, gnl\|bosTau2\|chr2 (84268956-84268197)
	201-965, gnl\|Hg17\|chr1 (22710631-22711396)
	201-965, gnl\|Mm7\|chr4 (136275166-136274445)

	csp (5.64152)
	cly (4.46375)
	cag (2.57031)
	cli (1.22249)
	jca (1.02564)
	col (0.975039)
	lnt (0.711541)
	jej (0.593531)
	pty (0.570858)
	cga (0.558191)
	nco (0.485201)
	clu (0.478583)
	ton (0.351)
	med (0.348756)
	cje (0.330469)
	mas (0.210305)
	fli (0.202881)
	nlu (0.191681)
	ill (0.175593)
	mcp (0.170648)
	fat (0.147427)
	hyp (0.142837)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)