Ss1.1-Pig4-TMW8036O02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGATGTGTGTTCTGGGCCTGTGTGCTCTTATTGATATGGAACAAATACCACAAGTT TTAAATCAGGTTTCTGGACAGATTTTGCCAGCTTTTATTCTTTTATTTAATGGATTAAAA AGAGCATATGCCTGTCATGCAGAACATGAGAATGACAGTGAGGACGATGATGAAGCCGAA GATGACGATGAAACGGAGGAACTAGGGAGTGATGAAGACGACATTGATGAAGATGGGCAG GAGTATTTGGAGATTCTGGCTAAGCAGGCGGGTGAAGATGGAGATGACGAAGACTGGGAG GAAGACGATGCTGAAGAAACGGCCCTGGAAGGCTATTCCACCATCATCGATGATGAGGAT AACCCTGTTGATGAGTATCAGATATTTAAAGCTATATTTCAAACTATACAGAACCGTAAC CCTGTGTGGTATCAGGCTCTGACTCATGGTCTTAATGAAGAACAAAGAAAACAGTTACAG GACATAGCAACTCTAGCCGATCAAAGAAGAGCAGCCCATGAATCCAAAATGATTGAGAAG CATGGAGGATACAAATTCAGTGCTCCAGTTGTGCCAAGTTCTTTCAATTTCGGAGGCCCG GCACCAGGTAACAGAATGATTACTAATCTACACACCTTATCAAGAGCGTGACTGTTGTGT TTACGTCTGGAACTGACCAGGCTGTAGAGAGCAGGGGTGGCCAGACCAAAACTAACTGAT TACGTGTTGCTCTTAGGTTCCAGATGTAGTCGCTGAAGCAAGCGTGAAGAAAAAAGGGAG ACCTGGCATAATGACTTGAACACAGTAGGCATTCCCTAAGTGTTTGTAAAATGAATTACT TAAAATTACATTAAAAGAAAATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGATGTGTGTTCTGGGCCTGTGTGCTCTTATTGATATGGAACAAATACCACAAGTT TTAAATCAGGTTTCTGGACAGATTTTGCCAGCTTTTATTCTTTTATTTAATGGATTAAAA AGAGCATATGCCTGTCATGCAGAACATGAGAATGACAGTGAGGACGATGATGAAGCCGAA GATGACGATGAAACGGAGGAACTAGGGAGTGATGAAGACGACATTGATGAAGATGGGCAG GAGTATTTGGAGATTCTGGCTAAGCAGGCGGGTGAAGATGGAGATGACGAAGACTGGGAG GAAGACGATGCTGAAGAAACGGCCCTGGAAGGCTATTCCACCATCATCGATGATGAGGAT AACCCTGTTGATGAGTATCAGATATTTAAAGCTATATTTCAAACTATACAGAACCGTAAC CCTGTGTGGTATCAGGCTCTGACTCATGGTCTTAATGAAGAACAAAGAAAACAGTTACAG GACATAGCAACTCTAGCCGATCAAAGAAGAGCAGCCCATGAATCCAAAATGATTGAGAAG CATGGAGGATACAAATTCAGTGCTCCAGTTGTGCCAAGTTCTTTCAATTTCGGAGGCCCG GCACCAGGTAACAGAATGATTACTAATCTACACACCTTATCAAGAGCGTGACTGTTGTGT TTACGTCTGGAACTGACCAGGCTGTAGAGAGCAGGGGTGGCCAGACCAAAACTAACTGAT TACGTGTTGCTCTTAGGTTCCAGATGTAGTCGCTGAAGCAAGCGTGAAGAAAAAAGGGAG ACCTGGCATAATGACTTGAACACAGTAGGCATTCCCTAAGTGTTTGTAAAATGAATTACT TAAAATTACATTAAAAGAAAATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 404-520, - strand, RNAz p=0.557453 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 404-520, - strand, RNAz p=0.557453 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 1-196, gnl|bosTau2|chr15 (25766261-25766456) | |
| 1-196, gnl|canFam2|chr21 (35929971-35930127) | |
| 1-196, gnl|danRer3|chrUn (161147721-161147880) | |
| 1-196, gnl|dasNov1|scaffold_246963 (1802-1646) | |
| 1-196, gnl|echTel1|scaffold_323167 (61688-61844) | |
| 1-196, gnl|fr1|chrUn (37157173-37157017) | |
| 1-196, gnl|galGal2|chr5 (6891002-6890847) | |
| 1-196, gnl|hg17|chr11 (9416202-9416359) | |
| 1-196, gnl|Hg17|chr11 (9416213-9416408) | |
| 1-196, gnl|mm7|chr7 (105966593-105966749) | |
| 1-196, gnl|Mm7|chr7 (105966603-105966798) | |
| 1-196, gnl|monDom2|scaffold_10 (59654943-59655099) | |
| 1-196, gnl|oryCun1|scaffold_81140 (4259-4103) | |
| 1-196, gnl|panTro1|chr1 (191028747-191028600) | |
| 1-196, gnl|rheMac2|chr14 (62500940-62500783) | |
| 1-196, gnl|rn3|chr1 (167802482-167802638) | |
| 1-196, gnl|tetNig1|chr5 (6392426-6392270) | |
| 1-196, gnl|xenTro1|scaffold_37 (2672662-2672506) | |
| 404-520, gnl|bosTau2|chr15 (25769392-25769508) | |
| 404-520, gnl|canFam2|chr21 (35934564-35934448) | |
| 404-520, gnl|canFam2|chr21 (35934564-35934446) | |
| 404-520, gnl|canFam2|chr21 (35934563-35934448) | |
| 404-520, gnl|danRer3|chr7 (53517658-53517773) | |
| 404-520, gnl|danRer3|chr7 (53517659-53517857) | |
| 404-520, gnl|danRer3|chrUn (161154085-161153971) | |
| 404-520, gnl|echTel1|scaffold_323167 (65381-65265) | |
| 404-520, gnl|echTel1|scaffold_323167 (65381-65262) | |
| 404-520, gnl|echTel1|scaffold_323167 (65380-65265) | |
| 404-520, gnl|fr1|chrUn (37156459-37156575) | |
| 404-520, gnl|fr1|chrUn (37156459-37156574) | |
| 404-520, gnl|fr1|chrUn (37156460-37156655) | |
| 404-520, gnl|galGal2|chr5 (6888968-6889084) | |
| 404-520, gnl|galGal2|chr5 (6889267-6889410) | |
| 404-520, gnl|galGal2|chr5 (6888969-6889082) | |
| 404-520, gnl|hg17|chr1 (207421010-207421125) | |
| 404-520, gnl|Hg17|chr11 (9420204-9420320) | |
| 404-520, gnl|hg17|chr13 (23594303-23594422) | |
| 404-520, gnl|hg17|chrX (51498093-51498210) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62038-61922) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62038-61922) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62036-61922) | |
| 404-520, gnl|mm7|chr7 (105969387-105969272) | |
| 404-520, gnl|mm7|chr7 (105969387-105969270) | |
| 404-520, gnl|mm7|chr7 (105969387-105969272) | |
| 404-520, gnl|Mm7|chr7 (105969271-105969387) | |
| 404-520, gnl|monDom2|scaffold_10 (59658812-59658701) | |
| 404-520, gnl|monDom2|scaffold_10 (59658817-59658699) | |
| 404-520, gnl|monDom2|scaffold_10 (59658816-59658704) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8731-8847) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8731-8838) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8732-8847) | |
| 404-520, gnl|panTro1|chr1 (191028118-191028233) | |
| 404-520, gnl|panTro1|chr14 (22787210-22787329) | |
| 404-520, gnl|panTro1|chrX (52703112-52703227) | |
| 404-520, gnl|rheMac2|chr1 (159537895-159537780) | |
| 404-520, gnl|rheMac2|chr17 (4413573-4413692) | |
| 404-520, gnl|rheMac2|chrX (49601559-49601664) | |
| 404-520, gnl|rn3|chr1 (167806091-167805976) | |
| 404-520, gnl|rn3|chr1 (167806091-167805974) | |
| 404-520, gnl|rn3|chr1 (167806091-167805976) | |
| 404-520, gnl|tetNig1|chr5 (6391721-6391837) | |
| 404-520, gnl|tetNig1|chr5 (6391721-6391836) | |
| 404-520, gnl|tetNig1|chr5 (6391722-6391913) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671177-2671290) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671177-2671290) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671178-2671290) | |
| 605-774, gnl|bosTau2|chr15 (25773042-25773204) | |
| 605-774, gnl|Hg17|chr11 (9425942-9426101) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-196, gnl|bosTau2|chr15 (25766261-25766456) | |
| 1-196, gnl|canFam2|chr21 (35929971-35930127) | |
| 1-196, gnl|danRer3|chrUn (161147721-161147880) | |
| 1-196, gnl|dasNov1|scaffold_246963 (1802-1646) | |
| 1-196, gnl|echTel1|scaffold_323167 (61688-61844) | |
| 1-196, gnl|fr1|chrUn (37157173-37157017) | |
| 1-196, gnl|galGal2|chr5 (6891002-6890847) | |
| 1-196, gnl|hg17|chr11 (9416202-9416359) | |
| 1-196, gnl|Hg17|chr11 (9416213-9416408) | |
| 1-196, gnl|mm7|chr7 (105966593-105966749) | |
| 1-196, gnl|Mm7|chr7 (105966603-105966798) | |
| 1-196, gnl|monDom2|scaffold_10 (59654943-59655099) | |
| 1-196, gnl|oryCun1|scaffold_81140 (4259-4103) | |
| 1-196, gnl|panTro1|chr1 (191028747-191028600) | |
| 1-196, gnl|rheMac2|chr14 (62500940-62500783) | |
| 1-196, gnl|rn3|chr1 (167802482-167802638) | |
| 1-196, gnl|tetNig1|chr5 (6392426-6392270) | |
| 1-196, gnl|xenTro1|scaffold_37 (2672662-2672506) | |
| 404-520, gnl|bosTau2|chr15 (25769392-25769508) | |
| 404-520, gnl|canFam2|chr21 (35934564-35934448) | |
| 404-520, gnl|canFam2|chr21 (35934564-35934446) | |
| 404-520, gnl|canFam2|chr21 (35934563-35934448) | |
| 404-520, gnl|danRer3|chr7 (53517658-53517773) | |
| 404-520, gnl|danRer3|chr7 (53517659-53517857) | |
| 404-520, gnl|danRer3|chrUn (161154085-161153971) | |
| 404-520, gnl|echTel1|scaffold_323167 (65381-65265) | |
| 404-520, gnl|echTel1|scaffold_323167 (65381-65262) | |
| 404-520, gnl|echTel1|scaffold_323167 (65380-65265) | |
| 404-520, gnl|fr1|chrUn (37156459-37156575) | |
| 404-520, gnl|fr1|chrUn (37156459-37156574) | |
| 404-520, gnl|fr1|chrUn (37156460-37156655) | |
| 404-520, gnl|galGal2|chr5 (6888968-6889084) | |
| 404-520, gnl|galGal2|chr5 (6889267-6889410) | |
| 404-520, gnl|galGal2|chr5 (6888969-6889082) | |
| 404-520, gnl|hg17|chr1 (207421010-207421125) | |
| 404-520, gnl|Hg17|chr11 (9420204-9420320) | |
| 404-520, gnl|hg17|chr13 (23594303-23594422) | |
| 404-520, gnl|hg17|chrX (51498093-51498210) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62038-61922) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62038-61922) | |
| 404-520, gnl|loxAfr1|scaffold_5636 (62036-61922) | |
| 404-520, gnl|mm7|chr7 (105969387-105969272) | |
| 404-520, gnl|mm7|chr7 (105969387-105969270) | |
| 404-520, gnl|mm7|chr7 (105969387-105969272) | |
| 404-520, gnl|Mm7|chr7 (105969271-105969387) | |
| 404-520, gnl|monDom2|scaffold_10 (59658812-59658701) | |
| 404-520, gnl|monDom2|scaffold_10 (59658817-59658699) | |
| 404-520, gnl|monDom2|scaffold_10 (59658816-59658704) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8731-8847) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8731-8838) | |
| 404-520, gnl|oryCun1|scaffold_164494 (8732-8847) | |
| 404-520, gnl|panTro1|chr1 (191028118-191028233) | |
| 404-520, gnl|panTro1|chr14 (22787210-22787329) | |
| 404-520, gnl|panTro1|chrX (52703112-52703227) | |
| 404-520, gnl|rheMac2|chr1 (159537895-159537780) | |
| 404-520, gnl|rheMac2|chr17 (4413573-4413692) | |
| 404-520, gnl|rheMac2|chrX (49601559-49601664) | |
| 404-520, gnl|rn3|chr1 (167806091-167805976) | |
| 404-520, gnl|rn3|chr1 (167806091-167805974) | |
| 404-520, gnl|rn3|chr1 (167806091-167805976) | |
| 404-520, gnl|tetNig1|chr5 (6391721-6391837) | |
| 404-520, gnl|tetNig1|chr5 (6391721-6391836) | |
| 404-520, gnl|tetNig1|chr5 (6391722-6391913) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671177-2671290) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671177-2671290) | |
| 404-520, gnl|xenTro1|scaffold_37 (2671178-2671290) | |
| 605-774, gnl|bosTau2|chr15 (25773042-25773204) | |
| 605-774, gnl|Hg17|chr11 (9425942-9426101) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sag (0.182715) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| thg (0.126791) | |
| pgl (0.118483) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.182715) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| thg (0.126791) | |
| pgl (0.118483) |