Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O06.3

Sequence:


               
               CCTTTTTCTCCGAGCCCGCTATTCACTAAGGATGTGGTGAAGAGTACACCTTCTGAAGCA
AACTTGAACATGACCACGAATTGTCAAGAGCCTTATCATTTGGCAAATGATCAAATTAAT
GACATGCAAGTTGTACCCACTTCTCTTCAGACACTTCCCCCGTCAAGTACAGTAGACCAG
GCTAAGAGAGTTGGAAGAAATCAAACTTTACCAGAGGGCTACGCATCTCAGCCCAAGTCC
TTGCATCTTTTGAAGCCATCCATCTTAAATTCTTTGGTACCTCCTCCAGTTCCTGAAACA
TCTCCAGGTAGGACTCCCACTTGTAAGAAGTCACCAACAATCACACCAGATAATTCAGCA
AAACTTCAGCCAACCTCTAGTCAAACAAATCTTGCAAATAATCCAAATCCAAAAGTATCT
AAGCTCCGCCCCCCTTCTGGCTCTTTCAAACAAAAACAAATAAGCAACCCCCGCCTAGAA
CCTCAAAACTTCCAGGCCAAGACAAGCATCCCAAGGCCACTGACAAGAAGAAAAGAAATC
ATGCAGAATACTAATGACAATTTGAATTCTGGGGATTGTTTGGCCTCTAATCAATATTCT
CGTCTTCCTAAACCAAAGATACATTAAATACATAGCCATCACCTGCCAATTTAAAAAAAT
CAACAACAATCTGTTCTGTACTAGCTTTATGTGCAGTTTGCTACCATGATGGAGGTTCCT
TTGAAAGCTTGCAAATCTTAAATTAAAATGTGGAAGCTTCTTCTAGTTCGGCTCTTCCAT
TTATATCCTGGTTGAAGTACATAGCATTTGAGCATATTTGTCTCAGGTAAACAAAAAGTT
TGCTTACCCACTCACAAGTCTACAGAAGGCTCTAATCATGTTATCCATCTCTCTGCACAT
TAGAAAATTCATAATATTCCATTTGGTGGGCAACAGATGTGCTTTGCTGATCTAGTCCTT
TTAAGGTCTGTGTTAATTGTGGTTCTGAGAGCCTCACCCTTTTCACTTGTCCCTCCTGTG
AATATGGTTACTATTTTAACTAAAGATTTGATGATAATGGAAAATGGTAGTCTGTAAACA
GAGTTCTGGCCAGTGATTTGTATATATAAAAGGTCTATGCAAACGCTCTGTGATGAATAA
AGGAGATCGGGCTTTTAATGGGAAGTTTATGTAAATTTTATTTTTCTTTGCTCTCTAGTC
TCAATATTTATTTGTTTACCAAACAAATTCTCCAGGCTACAATGTTTCACATTTTATATA
TATATAAATATATATAAACATATCAATTATATGTTGCTTTAACATTTTGTTTTACACACA
CACACACACACACACCCCATTTGTGTTTGTTTTTACTGGATACATTTGGGAAAGCTTGAG
TGAGGATACATCTTGAAATCTGATCTAAAGATGTATTCTTTTGTAACATACGTTGGTGCT
AGAGTTTTGCTGGTAATTCCATTTTGAACCCTATAGGTTTATGGATCCATGATAGCTGTT
TAAGGTTCCACAGCATATATTTTAAATTAAGTGTTTATTGTAATACTTATATTTATTGAC
TTTCTGCTAATATCTGAAGATTGGAATAATGGACTTGAAATGTTTGCACAAAACATAGGG
ATTTAAAACTATTTTCTATAGCAAAATGAGTTAAAATATTTTGAGTATAATTATAAATTT
AAGTAAGACTATCTTGAGAAAACTGGAATTTGTAATTGTGTTTTTCTGAGTTTTCCAGGT
TTCCCTTTTATGTTTGTCCGTGTTTGAATAACAGTTTCTTGAAAAGTAGATTTGGGAAGG
AAAATAAAATTGGAAAGGGAAATTGCATTTTATTAAAAGGTTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTTCTCCGAGCCCGCTATTCACTAAGGATGTGGTGAAGAGTACACCTTCTGAAGCA
AACTTGAACATGACCACGAATTGTCAAGAGCCTTATCATTTGGCAAATGATCAAATTAAT
GACATGCAAGTTGTACCCACTTCTCTTCAGACACTTCCCCCGTCAAGTACAGTAGACCAG
GCTAAGAGAGTTGGAAGAAATCAAACTTTACCAGAGGGCTACGCATCTCAGCCCAAGTCC
TTGCATCTTTTGAAGCCATCCATCTTAAATTCTTTGGTACCTCCTCCAGTTCCTGAAACA
TCTCCAGGTAGGACTCCCACTTGTAAGAAGTCACCAACAATCACACCAGATAATTCAGCA
AAACTTCAGCCAACCTCTAGTCAAACAAATCTTGCAAATAATCCAAATCCAAAAGTATCT
AAGCTCCGCCCCCCTTCTGGCTCTTTCAAACAAAAACAAATAAGCAACCCCCGCCTAGAA
CCTCAAAACTTCCAGGCCAAGACAAGCATCCCAAGGCCACTGACAAGAAGAAAAGAAATC
ATGCAGAATACTAATGACAATTTGAATTCTGGGGATTGTTTGGCCTCTAATCAATATTCT
CGTCTTCCTAAACCAAAGATACATTAAATACATAGCCATCACCTGCCAATTTAAAAAAAT
CAACAACAATCTGTTCTGTACTAGCTTTATGTGCAGTTTGCTACCATGATGGAGGTTCCT
TTGAAAGCTTGCAAATCTTAAATTAAAATGTGGAAGCTTCTTCTAGTTCGGCTCTTCCAT
TTATATCCTGGTTGAAGTACATAGCATTTGAGCATATTTGTCTCAGGTAAACAAAAAGTT
TGCTTACCCACTCACAAGTCTACAGAAGGCTCTAATCATGTTATCCATCTCTCTGCACAT
TAGAAAATTCATAATATTCCATTTGGTGGGCAACAGATGTGCTTTGCTGATCTAGTCCTT
TTAAGGTCTGTGTTAATTGTGGTTCTGAGAGCCTCACCCTTTTCACTTGTCCCTCCTGTG
AATATGGTTACTATTTTAACTAAAGATTTGATGATAATGGAAAATGGTAGTCTGTAAACA
GAGTTCTGGCCAGTGATTTGTATATATAAAAGGTCTATGCAAACGCTCTGTGATGAATAA
AGGAGATCGGGCTTTTAATGGGAAGTTTATGTAAATTTTATTTTTCTTTGCTCTCTAGTC
TCAATATTTATTTGTTTACCAAACAAATTCTCCAGGCTACAATGTTTCACATTTTATATA
TATATAAATATATATAAACATATCAATTATATGTTGCTTTAACATTTTGTTTTACACACA
CACACACACACACACCCCATTTGTGTTTGTTTTTACTGGATACATTTGGGAAAGCTTGAG
TGAGGATACATCTTGAAATCTGATCTAAAGATGTATTCTTTTGTAACATACGTTGGTGCT
AGAGTTTTGCTGGTAATTCCATTTTGAACCCTATAGGTTTATGGATCCATGATAGCTGTT
TAAGGTTCCACAGCATATATTTTAAATTAAGTGTTTATTGTAATACTTATATTTATTGAC
TTTCTGCTAATATCTGAAGATTGGAATAATGGACTTGAAATGTTTGCACAAAACATAGGG
ATTTAAAACTATTTTCTATAGCAAAATGAGTTAAAATATTTTGAGTATAATTATAAATTT
AAGTAAGACTATCTTGAGAAAACTGGAATTTGTAATTGTGTTTTTCTGAGTTTTCCAGGT
TTCCCTTTTATGTTTGTCCGTGTTTGAATAACAGTTTCTTGAAAAGTAGATTTGGGAAGG
AAAATAAAATTGGAAAGGGAAATTGCATTTTATTAAAAGGTTTTAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61860438|ref|XP_582449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860438|ref|XP_582449.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1627, gnl|bosTau2|chr28 (29858090-29859717)
               

               
               1-1627, gnl|Hg17|chr10 (86263377-86265008)
               

               
               1-1627, gnl|Mm7|chr14 (34307123-34305586)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1627, gnl|bosTau2|chr28 (29858090-29859717)
               

               
               1-1627, gnl|Hg17|chr10 (86263377-86265008)
               

               
               1-1627, gnl|Mm7|chr14 (34307123-34305586)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               hea (0.408998)
               

               
               mga (0.32041)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               mga (0.32041)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-1627, gnl\|bosTau2\|chr28 (29858090-29859717)
	1-1627, gnl\|Hg17\|chr10 (86263377-86265008)
	1-1627, gnl\|Mm7\|chr14 (34307123-34305586)

	hea (0.408998)
	mga (0.32041)
	spc (0.226732)
	tes (0.207814)
	nep (0.183925)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	isp (0.150376)
	ste (0.135208)
	ret (0.128733)
	jej (0.0989218)
	ldo (0.0970026)