Ss1.1-Pig4-TMW8036O07.5
|
AGATGGCGATGGGGTTGATGTGCGGACGCCGGGAGCTTCTGCGCTTGCTACAGCCTCAGC
GTCAATTCCACAGCGTCGCAGGGCTCCGCCAATGGCCACGGAAGCCGCTGACACCCGGGC
TCCGGTTCCCAGCCGGCCGGCGCTGCGGACACCCACATTATGTCCTCCTCGCGGCCCCAG
GCCCCCGGGGCCTCAGTACCTCTGCCATATTTTATGCAGAAGCCCAGGTTCAGGCTCCTC
CAGTTACTCCTGCAACTCCCCCACCCACAGCAGTACCTGAGGTGGCTTCTGGAGAAACTG
CAGATATAGTCCAAGCTGCTGCAGAACAGAGCTTCAGTGAACTTGGTTTGGGGTCATACA
CGCCAGTGGGACTGATCCAGAACTTACTGGAATTTATGCACGTTAACCTAGGCCTGCCTT
GGTGGGGGGCCATTGCTACATGTACAGTCCTTGCCCGTTGCCTGGTGTTTCCTCTCATCG
TGAAGGGCCAGCGAGAGGCAGCCAAGATCCACAACCACTTGCCAGAGATTCAGAAGTTTT
CCACTCGAATCAGAGAAGCCAAGTTGACAGGAAACCACACTGAGTTTTACAGGGCCTCCT
CGGAAATGACGTTCTACCAGAAAAAGCATGATATTAAACTCTTTAAACCTCTTATTCTGC
CTTTGACTCAGGCCCCGATCTTCATCTCCTTCTTCATTGCTTTGAGGGAAATGGCCAACC
TTCCTGTGCCCAGCCTGCAGACAGGTGGTCTCTGGTGGTTCCAAGATCTCACACTATCTG
ACCCCACCTACATATTACCCCTGGTGGTCACTGCTACAATGTGGGGTGTCCTTGAGTTAG
GTGCAGAAACTGGCATGCAAAGTTCTGACCTTCAGTGGATGAGAAATTTTATCAGATTGA
TGCCCCTGGCAGTCTTGCCCATAACTATCCATTTTCCCTCTGCAGTGTTCATGTATTGGT
TCTCCTCCAACATGTTTTCCCTGGGCCAGGTGCTTTGCCTCCGTATTCCAGCCGTCCGCA
CAGTACTTAAAATCCCCCAGCGTGTTGTACATGACTCTAGCACATTACTTCCACGGGAAG
GCTTCATTAAGAGCTTCAAAAGAGGTTGGAAGAATGCTGAAATGGCACATCAGCTACAAG
AGCGGGAACGACGCATGCAGAATCACTTGGAGCTAGCAGCCAGGGGTCCTTTACGCCAGA
CTTTTACCCACAACCCTCTGCTACAGCCTGGAAAGAATGACGCTCCCGTCACCACTAACA
GCAGTAGCAACAAACCAAAGGCAAAGCATCCCTGGCGTGACACACTTGGCTGAATTCTGT
TCCCTCCTCGTACTGGCAGGAACTCTCTCTCTCTTCAGAGAACTCAGCCTTAGAATGAGA
TTTGATGCTGGGTCCTTGCCCCAGACCTAGAAACCGTGGGACATGTTGATCTTCACTTTA
AAAGTGGATTCTGCTCCAGACTCTTCCACCTAAGTGTAAGAGAGCACTGGGGAACCAAGT
GATCTTCCCATCCACAGAGTTAATAGACCTCTGTACTACCCTCTGCTTTTGGATGCTTAT
TAAACAGGGAAATGGATTGTGTGCTTCAGAAAAAAACAATAGGTTGGGTGGTGATTGCTC
TTGCTGGCCTATGCTCTTAGGAGGTATCTCAGTGTTGTAACCTGGTATGAAGGGCTTAGA
TGTGTTGTCCTGTCCATACTTGCCGTATAGTCAGAAATGCGTCTGTTAAGTGGAGATTCT
ATCTGGAGGAACCACATTCATTTACTCCAAGATTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGATGGCGATGGGGTTGATGTGCGGACGCCGGGAGCTTCTGCGCTTGCTACAGCCTCAGC
GTCAATTCCACAGCGTCGCAGGGCTCCGCCAATGGCCACGGAAGCCGCTGACACCCGGGC
TCCGGTTCCCAGCCGGCCGGCGCTGCGGACACCCACATTATGTCCTCCTCGCGGCCCCAG
GCCCCCGGGGCCTCAGTACCTCTGCCATATTTTATGCAGAAGCCCAGGTTCAGGCTCCTC
CAGTTACTCCTGCAACTCCCCCACCCACAGCAGTACCTGAGGTGGCTTCTGGAGAAACTG
CAGATATAGTCCAAGCTGCTGCAGAACAGAGCTTCAGTGAACTTGGTTTGGGGTCATACA
CGCCAGTGGGACTGATCCAGAACTTACTGGAATTTATGCACGTTAACCTAGGCCTGCCTT
GGTGGGGGGCCATTGCTACATGTACAGTCCTTGCCCGTTGCCTGGTGTTTCCTCTCATCG
TGAAGGGCCAGCGAGAGGCAGCCAAGATCCACAACCACTTGCCAGAGATTCAGAAGTTTT
CCACTCGAATCAGAGAAGCCAAGTTGACAGGAAACCACACTGAGTTTTACAGGGCCTCCT
CGGAAATGACGTTCTACCAGAAAAAGCATGATATTAAACTCTTTAAACCTCTTATTCTGC
CTTTGACTCAGGCCCCGATCTTCATCTCCTTCTTCATTGCTTTGAGGGAAATGGCCAACC
TTCCTGTGCCCAGCCTGCAGACAGGTGGTCTCTGGTGGTTCCAAGATCTCACACTATCTG
ACCCCACCTACATATTACCCCTGGTGGTCACTGCTACAATGTGGGGTGTCCTTGAGTTAG
GTGCAGAAACTGGCATGCAAAGTTCTGACCTTCAGTGGATGAGAAATTTTATCAGATTGA
TGCCCCTGGCAGTCTTGCCCATAACTATCCATTTTCCCTCTGCAGTGTTCATGTATTGGT
TCTCCTCCAACATGTTTTCCCTGGGCCAGGTGCTTTGCCTCCGTATTCCAGCCGTCCGCA
CAGTACTTAAAATCCCCCAGCGTGTTGTACATGACTCTAGCACATTACTTCCACGGGAAG
GCTTCATTAAGAGCTTCAAAAGAGGTTGGAAGAATGCTGAAATGGCACATCAGCTACAAG
AGCGGGAACGACGCATGCAGAATCACTTGGAGCTAGCAGCCAGGGGTCCTTTACGCCAGA
CTTTTACCCACAACCCTCTGCTACAGCCTGGAAAGAATGACGCTCCCGTCACCACTAACA
GCAGTAGCAACAAACCAAAGGCAAAGCATCCCTGGCGTGACACACTTGGCTGAATTCTGT
TCCCTCCTCGTACTGGCAGGAACTCTCTCTCTCTTCAGAGAACTCAGCCTTAGAATGAGA
TTTGATGCTGGGTCCTTGCCCCAGACCTAGAAACCGTGGGACATGTTGATCTTCACTTTA
AAAGTGGATTCTGCTCCAGACTCTTCCACCTAAGTGTAAGAGAGCACTGGGGAACCAAGT
GATCTTCCCATCCACAGAGTTAATAGACCTCTGTACTACCCTCTGCTTTTGGATGCTTAT
TAAACAGGGAAATGGATTGTGTGCTTCAGAAAAAAACAATAGGTTGGGTGGTGATTGCTC
TTGCTGGCCTATGCTCTTAGGAGGTATCTCAGTGTTGTAACCTGGTATGAAGGGCTTAGA
TGTGTTGTCCTGTCCATACTTGCCGTATAGTCAGAAATGCGTCTGTTAAGTGGAGATTCT
ATCTGGAGGAACCACATTCATTTACTCCAAGATTAT
|
|
gi|57089985|ref|XP_537362.1| |
Protein identifier
|
gi|57089985|ref|XP_537362.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
225-444, gnl|bosTau2|chr10 (14605402-14605183) |
|
225-444, gnl|Hg17|chr14 (22307004-22307223) |
|
225-444, gnl|Mm7|chr14 (49230351-49230570) |
| |
|
660-839, gnl|bosTau2|chr10 (14602866-14602687) |
|
660-839, gnl|Hg17|chr14 (22309498-22309677) |
|
660-839, gnl|Mm7|chr14 (49234326-49234505) |
| |
|
942-1106, gnl|bosTau2|chr10 (14602312-14602148) |
|
942-1106, gnl|Hg17|chr14 (22310067-22310231) |
|
942-1106, gnl|Mm7|chr14 (49234865-49235029) |
| |
|
1185-1775, gnl|bosTau2|chr10 (14601899-14601301) |
|
1185-1775, gnl|Hg17|chr14 (22310482-22311699) |
|
1185-1775, gnl|Mm7|chr14 (49235389-49235993) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
225-444, gnl|bosTau2|chr10 (14605402-14605183) |
|
225-444, gnl|Hg17|chr14 (22307004-22307223) |
|
225-444, gnl|Mm7|chr14 (49230351-49230570) |
| |
|
660-839, gnl|bosTau2|chr10 (14602866-14602687) |
|
660-839, gnl|Hg17|chr14 (22309498-22309677) |
|
660-839, gnl|Mm7|chr14 (49234326-49234505) |
| |
|
942-1106, gnl|bosTau2|chr10 (14602312-14602148) |
|
942-1106, gnl|Hg17|chr14 (22310067-22310231) |
|
942-1106, gnl|Mm7|chr14 (49234865-49235029) |
| |
|
1185-1775, gnl|bosTau2|chr10 (14601899-14601301) |
|
1185-1775, gnl|Hg17|chr14 (22310482-22311699) |
|
1185-1775, gnl|Mm7|chr14 (49235389-49235993) |
|
fce (0.814775) |
|
ssp (0.677599) |
|
cov (0.660764) |
|
pro (0.512033) |
|
eep (0.490256) |
|
nms (0.427716) |
|
cty (0.41632) |
|
pla (0.401016) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
ton (0.351) |
|
tbr (0.308356) |
|
lnt (0.284616) |
|
ese (0.253004) |
|
cly (0.241284) |
|
med (0.232504) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
fce (0.814775) |
|
ssp (0.677599) |
|
cov (0.660764) |
|
pro (0.512033) |
|
eep (0.490256) |
|
nms (0.427716) |
|
cty (0.41632) |
|
pla (0.401016) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
ton (0.351) |
|
tbr (0.308356) |
|
lnt (0.284616) |
|
ese (0.253004) |
|
cly (0.241284) |
|
med (0.232504) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
