Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O09.3

Sequence:


               
               AAAAAGGAAAATTCTGACCTGAAACAGCAAATCAGTAGGTTGCAGATCCAGGTGACCTCA
CTTGCACAGTCAGAGAATGAGTTGCTGAATTCAAACCAAATACTAAAGGAGATGGTGGAG
AGTTAAAGCAGGAATGCCGAAATTTAAGAAGCCAGTCTGAAAAAGCACGACTGGAAGTTG
GAAAAGGCACTGAAGAGAAGCAAAAACACTGGTTGGAAGAAAAGCATAAGCTTCATGAAC
CGTATCACTGACAGAGAAGAAAAGATAATCAAGCCAAAAGAGAAACTGCAGCGAGCTGCA
ATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAACTGAAGAGGCTGCAGGAGAAG
GTAGAAGTCTTGGAGGCAAAGAGAGAAGAATTGGAAACAGAAAATCAGGTGTTAAATAGA
CAAAATGTTCCATTTGAAGAATACACAAGACTTCAGAAAAGACTGAAGGACATACAGAGA
AGACACAATGAATTCCGAAGCTTAATCTTGGTTCCTAACATACCTCCAACAGCATCCCTC
AATCCCGTTAGCTTTCATTCATCAAACGTGATTCCAGGCATGGAACTGTCCTTTCCTCCT
CACATACAGGAGGAACAGCATCAAAGGGAACTCTCTCTACTTCGCAAAAGACTAGAAGAA
CTAGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTCCTGGGGAATGATATTCT
TGGCGAAAAGACGGATCAAAAGGGATGAAATCAGTGACTCAATAAAACTTGAAGTGTGAA
CGTATGTGGCATTTAGATACTTTATTACTGTTTGCCAAAACACTTGAACGTGCCTCCAGA
AAAGGTACCAACTACATGCTGTATTGCATGAGTGTCTGGATTTTAGGGGCATAGTAATGA
CAGGTAAAGTATTAAAACGGGTTTAGAGATATTTAGACTATTATCGATATTTGAGGATGT
AAAATAAGTGATGAACTAATTAGGGAATCAAGTTTTTAAATTATTAATTTTACTTTGTTG
ATTTTGGCAGGGGGGTATTTTGCCTGAAATGTGCCCGTGTTGAATTCCCTTTCCCTTTCT
GTCAGATGCTTGGCAGTAATTGAGTCGTAAACATTTTTTGGCTTACTTCATACAAGCGTT
TTAAACCTCTAGTTCTTGAAAAACGATTTATAAGCATAAAAATTAAAAAGATGTCTAAAT
ATATATTACAAAGCACTATTTCTAAAAGCTGTGTGCACATAATTTATTAAAAAGCTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGAAAATTCTGACCTGAAACAGCAAATCAGTAGGTTGCAGATCCAGGTGACCTCA
CTTGCACAGTCAGAGAATGAGTTGCTGAATTCAAACCAAATACTAAAGGAGATGGTGGAG
AGTTAAAGCAGGAATGCCGAAATTTAAGAAGCCAGTCTGAAAAAGCACGACTGGAAGTTG
GAAAAGGCACTGAAGAGAAGCAAAAACACTGGTTGGAAGAAAAGCATAAGCTTCATGAAC
CGTATCACTGACAGAGAAGAAAAGATAATCAAGCCAAAAGAGAAACTGCAGCGAGCTGCA
ATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAACTGAAGAGGCTGCAGGAGAAG
GTAGAAGTCTTGGAGGCAAAGAGAGAAGAATTGGAAACAGAAAATCAGGTGTTAAATAGA
CAAAATGTTCCATTTGAAGAATACACAAGACTTCAGAAAAGACTGAAGGACATACAGAGA
AGACACAATGAATTCCGAAGCTTAATCTTGGTTCCTAACATACCTCCAACAGCATCCCTC
AATCCCGTTAGCTTTCATTCATCAAACGTGATTCCAGGCATGGAACTGTCCTTTCCTCCT
CACATACAGGAGGAACAGCATCAAAGGGAACTCTCTCTACTTCGCAAAAGACTAGAAGAA
CTAGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTCCTGGGGAATGATATTCT
TGGCGAAAAGACGGATCAAAAGGGATGAAATCAGTGACTCAATAAAACTTGAAGTGTGAA
CGTATGTGGCATTTAGATACTTTATTACTGTTTGCCAAAACACTTGAACGTGCCTCCAGA
AAAGGTACCAACTACATGCTGTATTGCATGAGTGTCTGGATTTTAGGGGCATAGTAATGA
CAGGTAAAGTATTAAAACGGGTTTAGAGATATTTAGACTATTATCGATATTTGAGGATGT
AAAATAAGTGATGAACTAATTAGGGAATCAAGTTTTTAAATTATTAATTTTACTTTGTTG
ATTTTGGCAGGGGGGTATTTTGCCTGAAATGTGCCCGTGTTGAATTCCCTTTCCCTTTCT
GTCAGATGCTTGGCAGTAATTGAGTCGTAAACATTTTTTGGCTTACTTCATACAAGCGTT
TTAAACCTCTAGTTCTTGAAAAACGATTTATAAGCATAAAAATTAAAAAGATGTCTAAAT
ATATATTACAAAGCACTATTTCTAAAAGCTGTGTGCACATAATTTATTAAAAAGCTTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55638651|ref|XP_509271.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55638651|ref|XP_509271.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-429, + strand, RNAz p=0.631973

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-429, + strand, RNAz p=0.631973

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               314-429, gnl|bosTau2|chr5 (15201396-15201281)
               

               
               314-429, gnl|canFam2|chr15 (37433023-37432922)
               

               
               314-429, gnl|dasNov1|scaffold_35 (281162-281263)
               

               
               314-429, gnl|echTel1|scaffold_284178 (75461-75362)
               

               
               314-429, gnl|Hg17|chr12 (93209263-93209148)
               

               
               314-429, gnl|hg17|chr7 (148300166-148300266)
               

               
               314-429, gnl|Mm7|chr10 (94347452-94347567)
               

               
               314-429, gnl|mm7|chr6 (47815008-47815082)
               

               
               314-429, gnl|monDom2|scaffold_34 (21788604-21788705)
               

               
               314-429, gnl|oryCun1|scaffold_197876 (9959-10044)
               

               
               314-429, gnl|panTro1|chr6 (151154146-151154246)
               

               
               314-429, gnl|rheMac2|chr3 (186485221-186485319)
               

               
               314-429, gnl|rn3|chr4 (76265751-76265825)
               


               
               608-1127, gnl|bosTau2|chr5 (15198661-15198117)
               

               
               608-1127, gnl|Hg17|chr12 (93205163-93204658)
               

               
               608-1127, gnl|Mm7|chr10 (94350412-94350899)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               314-429, gnl|bosTau2|chr5 (15201396-15201281)
               

               
               314-429, gnl|canFam2|chr15 (37433023-37432922)
               

               
               314-429, gnl|dasNov1|scaffold_35 (281162-281263)
               

               
               314-429, gnl|echTel1|scaffold_284178 (75461-75362)
               

               
               314-429, gnl|Hg17|chr12 (93209263-93209148)
               

               
               314-429, gnl|hg17|chr7 (148300166-148300266)
               

               
               314-429, gnl|Mm7|chr10 (94347452-94347567)
               

               
               314-429, gnl|mm7|chr6 (47815008-47815082)
               

               
               314-429, gnl|monDom2|scaffold_34 (21788604-21788705)
               

               
               314-429, gnl|oryCun1|scaffold_197876 (9959-10044)
               

               
               314-429, gnl|panTro1|chr6 (151154146-151154246)
               

               
               314-429, gnl|rheMac2|chr3 (186485221-186485319)
               

               
               314-429, gnl|rn3|chr4 (76265751-76265825)
               


               
               608-1127, gnl|bosTau2|chr5 (15198661-15198117)
               

               
               608-1127, gnl|Hg17|chr12 (93205163-93204658)
               

               
               608-1127, gnl|Mm7|chr10 (94350412-94350899)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (0.344392)
               

               
               tes (0.207814)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               tes (0.207814)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	314-429, gnl\|bosTau2\|chr5 (15201396-15201281)
	314-429, gnl\|canFam2\|chr15 (37433023-37432922)
	314-429, gnl\|dasNov1\|scaffold_35 (281162-281263)
	314-429, gnl\|echTel1\|scaffold_284178 (75461-75362)
	314-429, gnl\|Hg17\|chr12 (93209263-93209148)
	314-429, gnl\|hg17\|chr7 (148300166-148300266)
	314-429, gnl\|Mm7\|chr10 (94347452-94347567)
	314-429, gnl\|mm7\|chr6 (47815008-47815082)
	314-429, gnl\|monDom2\|scaffold_34 (21788604-21788705)
	314-429, gnl\|oryCun1\|scaffold_197876 (9959-10044)
	314-429, gnl\|panTro1\|chr6 (151154146-151154246)
	314-429, gnl\|rheMac2\|chr3 (186485221-186485319)
	314-429, gnl\|rn3\|chr4 (76265751-76265825)

	608-1127, gnl\|bosTau2\|chr5 (15198661-15198117)
	608-1127, gnl\|Hg17\|chr12 (93205163-93204658)
	608-1127, gnl\|Mm7\|chr10 (94350412-94350899)

	cbl (0.344392)
	tes (0.207814)
	ski (0.146735)
	lnt (0.142308)
	ova (0.129132)
	bla (0.124347)
	spc (0.113366)