Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O13.3

Sequence:


               
               GAGGGGGGAGAGCGGAGCTAGTCAGAGAGTGAGCGAGAGCAAGGAGGGAGAGGAGGAGAA
AGAGAGCGAGGGCTGGCTGGCGGGCGGGAGGCGGCGGCGGCTGTAATAGCAGGAGCAGCA
ACAGAAGGCGTCGGAGCCGGCGTCGGAGCTGCCCGCTGGGGGAGAGAGAGAGGAAAGAGA
CAGAGAGCGAGCTAGGAGAGGAGCCCGAGGCGAAAAAGTAACTGTCAAATGCGCGGCTCC
TTTAACCGGAGCGCTCAGTCCGGCTCCGAGAGTCATGGCGACCGCAGCGTCTAACCACTA
CAGCCTGCTCACCTCCAGCGCCTCCATCGTGCACGCTGAGCCGCCCGGCGGCATGCAGCA
GGGTGCGGGGGGCTACCGCGAGGCGCAGAGCCTGGTGCAGGGCGACTATGCCGCGCTGCA
GAGCAACGGGCACCCGCTCAGCCACGCTCACCAGTGGATCACCGCCCCCGCCGCCCCCTC
AGGGCCCGCCCGGGCACCCCGGCGCACACCACGACCCGCACTCGGATGAGGACACGCCGA
CCTCGGATGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGGCGGATCAAACTGGGAT
TTACCCAAGCGGACGTGGGGCTGGCGCTGGGCACCCTGTATGGCAACGTGTTCTCGCAGA
CCACCATCTGCAGGTTTGAGGCCCTGCAGCTGAGCTTCAAAAACATGTGCAAGCTGAAGC
CTTTGTTGAACAAGTGGTTGGAGGAGGCGGACTCGTCCTCGGGCAGCCCCACGAGCATAG
ACAAGATCGCAGCGCAGGGGCGCAAGAGGAAAAAGCGGACCTCCATCGAGGTGAGCGTCA
AGGGGGCTCTGGAGAGCCATTTCCTCAAATGCCCCAAGCCCTCGGCCCAGGAGATCACCT
CCCTCGCGGACAGCTTACAGCTGGAGAAGGAGGTGGTGAGAGTTTGGTTTTGTAACAGGA
GACAGAAAGAGAAAAGGATGACCCCTCCCGGAGGGACTTTGCCGGGCGCCGAGGATGTAT
ACGGGGGGAGTAGGGACACGCCACCACACCACGGGGTGCAGACACCCGTCCAGTGAACTC
GAGCGGGGGGAGGGGCAGAGCGCGGGGCTCCCCTCCCCTTCGGTCCAGGGCCCTTTCCCG
GCCCTCTTTTTCCCTCTCTAACTTCTGATTGTTCTTTTATTTTTAATTATTATTTCCCAC
GTCCCTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGGGAGAGCGGAGCTAGTCAGAGAGTGAGCGAGAGCAAGGAGGGAGAGGAGGAGAA
AGAGAGCGAGGGCTGGCTGGCGGGCGGGAGGCGGCGGCGGCTGTAATAGCAGGAGCAGCA
ACAGAAGGCGTCGGAGCCGGCGTCGGAGCTGCCCGCTGGGGGAGAGAGAGAGGAAAGAGA
CAGAGAGCGAGCTAGGAGAGGAGCCCGAGGCGAAAAAGTAACTGTCAAATGCGCGGCTCC
TTTAACCGGAGCGCTCAGTCCGGCTCCGAGAGTCATGGCGACCGCAGCGTCTAACCACTA
CAGCCTGCTCACCTCCAGCGCCTCCATCGTGCACGCTGAGCCGCCCGGCGGCATGCAGCA
GGGTGCGGGGGGCTACCGCGAGGCGCAGAGCCTGGTGCAGGGCGACTATGCCGCGCTGCA
GAGCAACGGGCACCCGCTCAGCCACGCTCACCAGTGGATCACCGCCCCCGCCGCCCCCTC
AGGGCCCGCCCGGGCACCCCGGCGCACACCACGACCCGCACTCGGATGAGGACACGCCGA
CCTCGGATGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGGCGGATCAAACTGGGAT
TTACCCAAGCGGACGTGGGGCTGGCGCTGGGCACCCTGTATGGCAACGTGTTCTCGCAGA
CCACCATCTGCAGGTTTGAGGCCCTGCAGCTGAGCTTCAAAAACATGTGCAAGCTGAAGC
CTTTGTTGAACAAGTGGTTGGAGGAGGCGGACTCGTCCTCGGGCAGCCCCACGAGCATAG
ACAAGATCGCAGCGCAGGGGCGCAAGAGGAAAAAGCGGACCTCCATCGAGGTGAGCGTCA
AGGGGGCTCTGGAGAGCCATTTCCTCAAATGCCCCAAGCCCTCGGCCCAGGAGATCACCT
CCCTCGCGGACAGCTTACAGCTGGAGAAGGAGGTGGTGAGAGTTTGGTTTTGTAACAGGA
GACAGAAAGAGAAAAGGATGACCCCTCCCGGAGGGACTTTGCCGGGCGCCGAGGATGTAT
ACGGGGGGAGTAGGGACACGCCACCACACCACGGGGTGCAGACACCCGTCCAGTGAACTC
GAGCGGGGGGAGGGGCAGAGCGCGGGGCTCCCCTCCCCTTCGGTCCAGGGCCCTTTCCCG
GCCCTCTTTTTCCCTCTCTAACTTCTGATTGTTCTTTTATTTTTAATTATTATTTCCCAC
GTCCCTTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9PVG9_COTJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9PVG9_COTJA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               777-936, - strand, RNAz p=0.549858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               777-936, - strand, RNAz p=0.549858

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               426-1077, gnl|bosTau2|chr11 (6550752-6551423)
               

               
               426-1077, gnl|Hg17|chr2 (104931316-104931990)
               

               
               426-1077, gnl|Mm7|chr1 (42938357-42939025)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-1077, gnl|bosTau2|chr11 (6550752-6551423)
               

               
               426-1077, gnl|Hg17|chr2 (104931316-104931990)
               

               
               426-1077, gnl|Mm7|chr1 (42938357-42939025)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	426-1077, gnl\|bosTau2\|chr11 (6550752-6551423)
	426-1077, gnl\|Hg17\|chr2 (104931316-104931990)
	426-1077, gnl\|Mm7\|chr1 (42938357-42939025)