Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O14.3

Sequence:


               
               TTTAGGTTACTAAGAACCACAGGCACTGATGACTCTACAACAGAAAATGACATCTTCCCA
GGCAAAAGCTACATCTGGTTGACCATCATTTTAATCCAGAACTTCCTCATAAAATGCATG
AAGGACTTTGATCGTGAATTAATTTTTTAGGTATTAAATGTATACAACTGATTAAATTAT
TGTATATAAACCAGAAGCAGGACCCTCATCTGGGTTTGACCACTTTTTATACATGTTCAT
ATGCATATGGCAGCCACAAGAGAACCCCACTTTTCTTCCCTTCTATCACCAGAGCATCTG
GTGGTGATGGGGTTCTATAAAAGCAGCAATAGAAATAAGCATAAAGCATTGACCTCAGAG
CAGCTGAATGGTCCTACCATTACAGCAATGGGCGTTTTGATCTGGTCCTTGAGCCTTAAG
AAGCAGAAAGCAAAAGTAGAGGGGGACCATGACCTGGAGCAGGACCCTCTTTTCACATTA
GCAGTTTAGTTTGAGGCTCCCTTGGCTTTGTGGCTTCCACAGAGCCCAAAGCAGGTAGCC
AAAGGGCTTCAGGTGAAATTTGGCATAAGCACCTGCCACTGAAGGGCATCACTCAGATGA
TCACAGGCCCTCATTTTTTAGCCTACTAGTCCCAGTGGCCAAGGTATCCCCATCCTAGCT
TCTGTGAGAGTTAAATCACAGATAGGCTTCTGCTAATTTACAGCTGTTTGGAGAGGAAAG
TAGTACAGACCACTTATAAGCCTGCTGAAGACTAGCTTGCTGTCTTTTTGGGAAAGTTGA
GAATCACTGTTTTAAAGAAAAGAGGTGTACATAATTTATGCAGGCAAGTATAATACCAAC
GTCCTTGGTTTTGTGAGATATATATATATATATATGTATATGCTTCTACATATATAAGTA
TGTTTTCAAGCATATATGTATATATGCTTGAAAATAAAGATTTAATACTTTAGTGTTTTT
TATGTGGGGGTTTTGAGAAAGAAGAAAGGAAGGAATGTATATTATGGATTTAACCTTAGG
CTGGCAAAAAGGAACTGTTATCCTTCATGTTTGCATTGTTCACTGGAGCTCCCCAGGACT
GTAGCTTCAGAGGTTGTTCTGACAGAAAAGATAAGCATTGCTCTTGAAAATGTTACACAG
ATTATATAGTTGCTTTGGTAACTTCTTTGTGTTTGAATCTGTGCTTCTGTTTTGGTCTTT
GTTACACAAATACTGTTAAAGTTAGTAATTCTGAAAAGCAAAGAAATGAATTTGATGAGG
AAATTCAAGTATCTGATGGAGGATTGTCTTAAAGACCTACAAGGTCCTTTTCAACCAACT
CACTTCTCCAGTGAAATGTGATAGTTTTTTCTTTTAAAAGCAACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGGTTACTAAGAACCACAGGCACTGATGACTCTACAACAGAAAATGACATCTTCCCA
GGCAAAAGCTACATCTGGTTGACCATCATTTTAATCCAGAACTTCCTCATAAAATGCATG
AAGGACTTTGATCGTGAATTAATTTTTTAGGTATTAAATGTATACAACTGATTAAATTAT
TGTATATAAACCAGAAGCAGGACCCTCATCTGGGTTTGACCACTTTTTATACATGTTCAT
ATGCATATGGCAGCCACAAGAGAACCCCACTTTTCTTCCCTTCTATCACCAGAGCATCTG
GTGGTGATGGGGTTCTATAAAAGCAGCAATAGAAATAAGCATAAAGCATTGACCTCAGAG
CAGCTGAATGGTCCTACCATTACAGCAATGGGCGTTTTGATCTGGTCCTTGAGCCTTAAG
AAGCAGAAAGCAAAAGTAGAGGGGGACCATGACCTGGAGCAGGACCCTCTTTTCACATTA
GCAGTTTAGTTTGAGGCTCCCTTGGCTTTGTGGCTTCCACAGAGCCCAAAGCAGGTAGCC
AAAGGGCTTCAGGTGAAATTTGGCATAAGCACCTGCCACTGAAGGGCATCACTCAGATGA
TCACAGGCCCTCATTTTTTAGCCTACTAGTCCCAGTGGCCAAGGTATCCCCATCCTAGCT
TCTGTGAGAGTTAAATCACAGATAGGCTTCTGCTAATTTACAGCTGTTTGGAGAGGAAAG
TAGTACAGACCACTTATAAGCCTGCTGAAGACTAGCTTGCTGTCTTTTTGGGAAAGTTGA
GAATCACTGTTTTAAAGAAAAGAGGTGTACATAATTTATGCAGGCAAGTATAATACCAAC
GTCCTTGGTTTTGTGAGATATATATATATATATATGTATATGCTTCTACATATATAAGTA
TGTTTTCAAGCATATATGTATATATGCTTGAAAATAAAGATTTAATACTTTAGTGTTTTT
TATGTGGGGGTTTTGAGAAAGAAGAAAGGAAGGAATGTATATTATGGATTTAACCTTAGG
CTGGCAAAAAGGAACTGTTATCCTTCATGTTTGCATTGTTCACTGGAGCTCCCCAGGACT
GTAGCTTCAGAGGTTGTTCTGACAGAAAAGATAAGCATTGCTCTTGAAAATGTTACACAG
ATTATATAGTTGCTTTGGTAACTTCTTTGTGTTTGAATCTGTGCTTCTGTTTTGGTCTTT
GTTACACAAATACTGTTAAAGTTAGTAATTCTGAAAAGCAAAGAAATGAATTTGATGAGG
AAATTCAAGTATCTGATGGAGGATTGTCTTAAAGACCTACAAGGTCCTTTTCAACCAACT
CACTTCTCCAGTGAAATGTGATAGTTTTTTCTTTTAAAAGCAACCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-308, - strand, RNAz p=0.894099

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-308, - strand, RNAz p=0.894099

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               6-475, gnl|bosTau2|chr17 (36854887-36854398)
               

               
               6-475, gnl|Hg17|chr12 (110930052-110929588)
               

               
               6-475, gnl|Mm7|chr5 (120673939-120674404)
               


               
               511-1016, gnl|bosTau2|chr17 (36854391-36853879)
               

               
               511-1016, gnl|Hg17|chr12 (110929551-110929059)
               

               
               511-1016, gnl|Mm7|chr5 (120674411-120674888)
               


               
               1048-1366, gnl|bosTau2|chr17 (36853785-36853469)
               

               
               1048-1366, gnl|Hg17|chr12 (110928963-110928641)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-475, gnl|bosTau2|chr17 (36854887-36854398)
               

               
               6-475, gnl|Hg17|chr12 (110930052-110929588)
               

               
               6-475, gnl|Mm7|chr5 (120673939-120674404)
               


               
               511-1016, gnl|bosTau2|chr17 (36854391-36853879)
               

               
               511-1016, gnl|Hg17|chr12 (110929551-110929059)
               

               
               511-1016, gnl|Mm7|chr5 (120674411-120674888)
               


               
               1048-1366, gnl|bosTau2|chr17 (36853785-36853469)
               

               
               1048-1366, gnl|Hg17|chr12 (110928963-110928641)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               isp (0.300752)
               

               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	6-475, gnl\|bosTau2\|chr17 (36854887-36854398)
	6-475, gnl\|Hg17\|chr12 (110930052-110929588)
	6-475, gnl\|Mm7\|chr5 (120673939-120674404)

	511-1016, gnl\|bosTau2\|chr17 (36854391-36853879)
	511-1016, gnl\|Hg17\|chr12 (110929551-110929059)
	511-1016, gnl\|Mm7\|chr5 (120674411-120674888)

	1048-1366, gnl\|bosTau2\|chr17 (36853785-36853469)
	1048-1366, gnl\|Hg17\|chr12 (110928963-110928641)

	isp (0.300752)
	lin (0.291206)
	sin (0.174948)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	ebs (0.118301)
	cty (0.10408)